JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TELO2_chr16_1488360_1515454	0/0	c0064	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0065	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0066	2514	1	0	0	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0067	2514	1	0	0	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0068	2514	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0069	2514	1	0	1	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0070	2514	1	0	0	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0071	2514	1	0	0	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0072	2514	1	0	1	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0073	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0074	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0075	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	c0076	2514	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TEN1_chr17_75974240_76005586	1/1	c0001	372	310	40	68	147	11	42	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	c0002	372	64	54	7	2	1	0	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	c0003	372	2	0	0	0	2	0	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	c0004	372	1	0	0	1	0	0	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	c0005	372	1	1	0	0	0	0	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	c0006	372	1	0	1	0	0	0	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	c0007	372	1	1	0	0	0	0	copy fasta	TEN1	chr17	75974240	76005586
TENM1_chrX_124370903_125209312	1/0	c0001	8199	54	6	7	34	1	5	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/1	c0002	8199	20	3	5	4	3	4	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0003	8199	20	1	4	13	1	1	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0004	8199	7	1	0	3	0	3	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0005	8199	5	3	1	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0006	8199	3	0	0	3	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0007	8199	3	3	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0008	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0009	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0010	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0011	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0012	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0013	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0014	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0015	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0016	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0017	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0018	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0019	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0020	8199	1	0	1	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0021	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0022	8199	1	0	0	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0023	8199	1	0	0	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0024	8200	1	0	0	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0025	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0026	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0027	8199	1	0	0	0	0	1	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0028	8199	1	0	0	0	0	1	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0029	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0030	8199	1	0	0	0	0	1	copy fasta	TENM1	chrX	124370903	125209312