JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BANF2_chr20_17694966_17740871	0/0	c0005	273	7	6	1	0	0	0	copy fasta	BANF2	chr20	17694966	17740871
BANF2_chr20_17694966_17740871	0/0	c0006	273	1	0	0	1	0	0	copy fasta	BANF2	chr20	17694966	17740871
BANK1_chr4_101785730_102079812	0/0	c0001	2358	87	14	19	45	0	9	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0002	2358	61	27	6	21	0	7	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/1	c0003	2358	43	1	17	21	1	2	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0004	2358	31	7	7	14	0	3	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0005	2358	15	2	3	8	0	2	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0006	2358	14	6	3	3	1	1	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0007	2358	7	7	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0008	2358	6	0	0	6	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0009	2358	4	1	1	2	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0010	2358	2	1	1	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0011	2358	2	1	1	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0012	2358	2	2	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0013	2358	2	2	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0014	2358	2	0	0	2	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0015	2358	1	1	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0016	2358	1	0	0	1	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	1/0	c0017	2358	1	0	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0018	2358	1	1	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0019	2358	1	0	0	1	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	c0020	2358	1	1	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANP_chr16_87946434_88082316	0/1	c0001	1593	95	19	21	43	4	7	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0002	1593	57	1	7	41	0	8	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0003	1593	42	11	4	13	2	12	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0004	1593	31	3	15	10	0	3	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0005	1593	21	0	3	16	0	2	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0006	1593	17	1	11	0	2	3	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0007	1593	16	14	0	2	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0008	1593	13	13	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0009	1593	11	10	0	1	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0010	1593	8	4	1	0	0	3	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0011	1593	6	4	0	2	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	1/0	c0012	1593	4	1	1	1	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0013	1593	3	0	0	0	0	3	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0014	1593	3	2	0	1	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0015	1593	2	0	0	1	0	1	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0016	1593	2	1	0	0	0	1	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0017	1593	2	0	1	1	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0018	1593	2	1	1	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0019	1593	2	2	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0020	1593	2	2	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0021	1593	1	0	0	0	0	1	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0022	1593	1	0	0	1	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0023	1593	1	1	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0024	1593	1	0	0	0	0	1	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0025	1593	1	0	0	1	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0026	1593	1	0	0	1	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0027	1593	1	1	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0028	1593	1	1	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316