JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TENM1_chrX_124370903_125209312	0/0	c0031	8199	1	0	0	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0032	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0033	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0034	8199	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	c0035	8199	1	0	1	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM2_chr5_166974029_168269157	0/0	c0001	8325	4	4	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0002	8325	4	3	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0003	8325	3	2	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0004	8325	3	1	1	0	0	1	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0005	8325	3	2	0	0	0	1	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0006	8325	2	2	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0007	8325	2	1	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0008	8325	2	1	0	0	0	1	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0009	8325	2	2	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0010	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0011	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0012	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0013	8325	1	0	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0014	8325	1	0	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0015	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0016	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0017	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0018	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0019	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0020	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0021	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0022	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0023	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0024	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0025	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0026	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0027	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0028	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0029	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0030	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0031	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0032	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0033	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0034	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0035	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0036	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0037	8325	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	c0038	8325	1	0	0	0	0	1	copy fasta	TENM2	chr5	166974029	168269157
TENM3_chr4_182238402_182808024	0/0	c0001	8100	23	3	5	11	1	3	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0002	8100	14	10	4	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0003	8100	9	1	3	4	0	1	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0004	8100	6	3	1	1	0	1	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0005	8100	6	4	0	1	0	1	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0006	8100	6	1	4	1	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0007	8100	5	3	1	0	1	0	copy fasta	TENM3	chr4	182238402	182808024