JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TENM3_chr4_182238402_182808024	0/0	c0008	8100	4	1	1	0	0	2	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0009	8100	4	1	1	1	0	1	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0010	8100	4	4	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0011	8100	3	1	2	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0012	8100	3	3	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0013	8100	3	3	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0014	8100	3	3	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0015	8100	2	1	0	1	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0016	8100	2	0	1	0	1	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0017	8100	2	0	0	1	0	1	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0018	8100	2	2	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0019	8100	2	0	0	2	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0020	8100	2	0	1	1	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0021	8100	2	2	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0022	8100	2	0	1	0	0	1	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0023	8100	2	2	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0024	8100	2	0	2	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0025	8100	2	0	2	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0026	8100	1	0	0	1	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0027	8100	1	0	0	1	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0028	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0029	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0030	8100	1	0	0	0	1	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0031	8100	1	0	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0032	8100	1	0	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0033	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0034	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0035	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0036	8100	1	0	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0037	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0038	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0039	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0040	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0041	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0042	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0043	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0044	8100	1	0	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0045	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0046	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0047	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0048	8100	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0049	8100	1	0	0	0	0	1	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	c0050	8100	1	0	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM4_chr11_78647829_79446030	1/0	c0001	8310	20	11	3	2	1	2	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0002	8310	8	3	2	0	2	1	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/1	c0003	8310	4	0	1	0	0	2	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0004	8310	4	3	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0005	8310	4	1	1	1	0	1	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0006	8310	3	3	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0007	8310	3	3	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030