JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TENM4_chr11_78647829_79446030	0/0	c0008	8310	3	3	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0009	8310	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0010	8310	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0011	8310	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0012	8310	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0013	8310	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0014	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0015	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0016	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0017	8310	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0018	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0019	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0020	8310	1	0	0	1	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0021	8310	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0022	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0023	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0024	8310	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0025	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0026	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0027	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0028	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0029	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0030	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0031	8310	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0032	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0033	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0034	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0035	8310	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0036	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0037	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0038	8310	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0039	8310	1	0	0	0	0	1	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0040	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0041	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0042	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0043	8310	1	0	0	0	1	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0044	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0045	8310	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0046	8310	1	0	0	0	0	1	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0047	8310	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	c0048	8310	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENT2_chr5_79607441_79693246	1/1	c0001	1455	317	85	40	143	12	35	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	c0002	1455	18	1	10	2	0	5	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	c0003	1455	4	0	0	4	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	c0004	1455	2	0	0	2	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	c0005	1455	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	c0006	1455	1	0	0	1	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	c0007	1455	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT4A_chr5_6708432_6762044	0/1	c0001	2379	199	25	42	98	7	26	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	1/0	c0002	2379	162	52	31	60	6	12	copy fasta	TENT4A	chr5	6708432	6762044