JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TENT4A_chr5_6708432_6762044	0/0	c0003	2379	10	10	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0004	2379	3	0	1	0	1	1	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0005	2379	2	0	1	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0006	2379	2	2	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0007	2379	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0008	2379	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0009	2379	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0010	2379	1	0	1	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0011	2379	1	0	0	0	0	1	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0012	2379	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0013	2379	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0014	2379	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0015	2379	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	c0016	2379	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4B_chr16_50148306_50240310	1/1	c0001	2142	282	76	58	107	12	27	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	c0002	2142	11	0	1	10	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	c0003	2142	8	8	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	c0004	2142	3	0	0	3	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	c0005	2142	2	2	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	c0006	2154	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	c0007	2142	1	0	1	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	c0008	2142	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	c0009	2142	1	0	0	0	0	1	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	c0010	2142	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	c0011	2142	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT5A_chr6_81740730_81757681	0/0	c0001	1344	204	37	36	106	7	18	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0002	1314	81	12	25	32	3	9	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	1/1	c0003	1329	72	11	9	40	1	9	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0004	1359	33	7	8	13	0	5	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0005	1344	29	11	2	11	3	2	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0006	1359	10	8	0	1	1	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0007	1329	3	2	1	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0008	1329	3	2	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0009	1299	3	1	1	0	1	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0010	1374	2	0	0	1	0	1	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0011	1344	1	1	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0012	1359	1	1	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0013	1344	1	0	0	0	0	1	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0014	1344	1	0	0	0	0	1	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0015	1329	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	c0016	1344	1	1	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5B_chr1_27000020_27017850	1/1	c0001	1278	160	63	33	38	7	17	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0002	1278	101	4	23	59	4	11	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0003	1278	6	1	3	1	1	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0004	1278	5	5	0	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0005	1278	3	2	1	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0006	1278	2	2	0	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0007	1278	2	0	1	0	1	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0008	1278	1	0	0	0	1	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0009	1278	1	0	0	1	0	0	copy fasta	TENT5B	chr1	27000020	27017850