JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TENT5B_chr1_27000020_27017850	0/0	c0010	1278	1	0	0	1	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0011	1266	1	0	0	0	0	1	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0012	1278	1	0	0	0	0	1	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0013	1278	1	1	0	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0014	1278	1	1	0	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0015	1278	1	1	0	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	c0016	1278	1	0	1	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5C_chr1_117601048_117633389	1/0	c0001	1176	190	34	21	111	5	18	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/1	c0002	1176	90	22	25	30	1	11	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	c0003	1176	50	23	4	21	0	2	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	c0004	1176	46	0	13	24	2	7	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	c0005	1176	9	9	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	c0006	1176	8	8	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	c0007	1176	1	0	1	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5D_chrX_80415447_80450309	1/0	c0001	1170	220	47	23	115	5	29	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/1	c0002	1170	72	19	29	12	6	5	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	c0003	1170	2	2	0	0	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	c0004	1170	1	1	0	0	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	c0005	1170	1	0	1	0	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	c0006	1170	1	0	1	0	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	c0007	1170	1	1	0	0	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TEP1_chr14_20360667_20418501	0/0	c0001	7884	39	1	10	19	5	4	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0002	7884	32	4	3	20	0	5	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0003	7884	20	1	10	8	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/1	c0004	7884	15	0	7	3	1	3	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0005	7884	14	0	0	14	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0006	7884	12	0	0	9	1	2	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0007	7884	11	2	3	5	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0008	7884	11	0	3	7	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0009	7884	9	0	0	9	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0010	7884	9	0	1	6	2	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0011	7884	7	2	0	4	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0012	7884	7	5	0	2	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0013	7884	7	0	4	3	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0014	7884	5	0	3	2	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0015	7884	5	0	4	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0016	7884	5	2	0	3	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0017	7884	5	5	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0018	7884	4	4	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0019	7884	4	0	0	4	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0020	7884	3	0	0	2	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0021	7884	3	2	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0022	7884	3	1	2	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0023	7884	3	0	0	3	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0024	7884	3	0	0	3	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0025	7884	3	0	0	0	0	3	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0026	7884	3	0	3	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0027	7884	3	0	0	3	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0028	7884	2	0	1	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0029	7884	2	0	2	0	0	0	copy fasta	TEP1	chr14	20360667	20418501