JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
TEP1_chr14_20360667_20418501	0/0	c0080	7884	1	0	0	1	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0081	7884	1	0	0	1	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0082	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0083	7884	1	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0084	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0085	7884	1	0	0	1	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0086	7884	1	0	0	1	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0087	7884	1	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0088	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0089	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0090	7884	1	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0091	7884	1	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0092	7884	1	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0093	7884	1	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0094	7884	1	0	0	1	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0095	7884	1	0	0	1	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0096	7884	1	0	0	1	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0097	7884	1	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0098	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0099	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0100	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0101	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0102	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0103	7884	1	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0104	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0105	7884	1	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0106	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0107	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0108	7884	1	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0109	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0110	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0111	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0112	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0113	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0114	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0115	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0116	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0117	7884	1	0	0	1	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0118	7884	1	0	0	1	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0119	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0120	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0121	7884	1	0	0	1	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0122	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0123	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0124	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0125	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0126	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0127	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0128	7884	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0129	7884	1	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501