JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEP1_chr14_20360667_20418501	0/0	c0130	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0131	7884	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0132	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0133	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0134	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0135	7884	1	0	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0136	7884	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0137	7884	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0138	7884	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0139	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0140	7884	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0141	7884	1	0	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0142	7884	1	0	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0143	7884	1	0	0	0	1	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0144	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0145	7884	1	0	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0146	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0147	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0148	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0149	7884	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0150	7884	1	0	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0151	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0152	7884	1	0	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0153	7884	1	0	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	1/0	c0154	7884	1	0	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0155	7884	1	0	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0156	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0157	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0158	7884	1	0	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0159	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	c0160	7884	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEPP_chr16_57971544_57993116	0/1	c0001	651	318	94	45	118	17	43	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	1/0	c0002	651	122	3	27	85	1	5	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	0/0	c0003	651	3	0	0	3	0	0	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	0/0	c0004	651	1	1	0	0	0	0	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	0/0	c0005	651	1	1	0	0	0	0	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	0/0	c0006	651	1	1	0	0	0	0	copy fasta	TEPP	chr16	57971544	57993116
TEPSIN_chr17_81223277_81244055	0/1	c0001	1782	130	7	26	71	4	21	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	1/0	c0002	1782	117	49	12	48	2	5	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0003	1782	54	10	21	12	6	5	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0004	1782	9	2	0	4	0	3	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0005	1782	7	4	3	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0006	1782	7	7	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0007	1782	6	0	0	0	0	6	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0008	1782	5	0	0	5	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0009	1782	4	4	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0010	1782	3	3	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0011	1782	3	0	2	0	1	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0012	1782	2	0	2	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0013	1782	2	0	0	0	0	2	copy fasta	TEPSIN	chr17	81223277	81244055