JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEPSIN_chr17_81223277_81244055	0/0	c0014	1806	1	0	0	0	1	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0015	1782	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0016	1782	1	0	1	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0017	1782	1	0	1	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0018	1782	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0019	1782	1	0	1	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0020	1782	1	0	0	1	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0021	1782	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0022	1782	1	0	0	1	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0023	1782	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0024	1782	1	0	1	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0025	1782	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0026	1782	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0027	1782	1	0	0	1	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0028	1782	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0029	1782	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	c0030	1734	1	0	0	1	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TERB1_chr16_66749640_66806584	1/1	c0001	2184	137	24	28	57	6	20	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	c0002	2184	131	9	23	79	5	15	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	c0003	2184	76	50	8	7	1	10	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	c0004	2184	1	1	0	0	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	c0005	2184	1	0	1	0	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	c0006	2184	1	1	0	0	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	c0007	2184	1	0	0	1	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	c0008	2184	1	0	0	1	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	c0009	2184	1	0	0	0	0	1	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	c0010	2184	1	0	0	1	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	c0011	2184	1	1	0	0	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB2_chr15_44951687_44984229	1/1	c0001	663	335	88	54	151	14	26	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	c0002	663	3	0	0	3	0	0	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	c0003	663	3	1	0	2	0	0	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	c0004	663	2	0	0	0	0	2	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	c0005	663	2	2	0	0	0	0	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	c0006	663	1	1	0	0	0	0	copy fasta	TERB2	chr15	44951687	44984229
TERF1_chr8_73003864_73053123	1/1	c0001	1320	331	88	63	119	14	45	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	c0002	1320	3	3	0	0	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	c0003	1326	3	0	3	0	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	c0004	1323	2	0	0	2	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	c0005	1301	1	0	0	1	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	c0006	1320	1	0	0	0	0	1	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	c0007	1323	1	1	0	0	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF2IP_chr16_75642773_75662432	1/1	c0001	1200	374	88	74	160	13	37	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	c0002	1200	7	0	3	0	1	3	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	c0003	1200	2	0	0	2	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	c0004	1200	1	0	0	1	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	c0005	1200	1	0	1	0	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	c0006	1200	1	0	0	1	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	c0007	1200	1	0	0	1	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	c0008	1200	1	0	0	1	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	c0009	1200	1	0	0	1	0	0	copy fasta	TERF2IP	chr16	75642773	75662432