JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TERF2IP_chr16_75642773_75662432	0/0	c0010	1200	1	0	0	1	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2_chr16_69350567_69391007	1/1	c0001	1629	323	79	66	127	14	35	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	c0002	1629	6	6	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	c0003	1629	4	4	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	c0004	1629	2	0	0	0	0	2	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	c0005	1629	2	0	0	0	0	2	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	c0006	1629	1	1	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	c0007	1629	1	0	0	0	0	1	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	c0008	1629	1	0	0	1	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERT_chr5_1248167_1300068	1/1	c0001	3399	210	74	39	73	7	15	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0002	3399	83	5	9	40	4	25	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0003	3399	47	1	14	25	3	4	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0004	3399	16	1	4	6	1	4	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0005	3399	8	8	0	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0006	3399	6	0	0	6	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0007	3399	2	0	2	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0008	3399	2	2	0	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0009	3399	1	1	0	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0010	3399	1	0	1	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0011	3399	1	0	0	1	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0012	3399	1	0	0	0	0	1	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0013	3399	1	0	0	0	0	1	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0014	3399	1	1	0	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0015	3338	1	0	0	1	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0016	3399	1	0	0	1	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0017	3399	1	1	0	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0018	3399	1	0	0	1	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0019	3399	1	1	0	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0020	3399	1	0	0	1	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0021	3399	1	0	0	1	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0022	3399	1	0	0	0	1	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0023	3399	1	0	0	1	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0024	3399	1	0	1	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0025	3399	1	1	0	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	c0026	3399	1	0	0	1	0	0	copy fasta	TERT	chr5	1248167	1300068
TESC_chr12_117033923_117104416	1/1	c0001	645	307	96	50	115	11	33	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	c0002	645	2	2	0	0	0	0	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	c0003	645	1	0	0	0	1	0	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	c0004	645	1	0	0	1	0	0	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	c0005	645	1	0	0	0	0	1	copy fasta	TESC	chr12	117033923	117104416
TESK1_chr9_35600262_35615033	1/0	c0001	1881	186	32	34	90	7	22	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/1	c0002	1881	183	48	38	65	7	24	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	c0003	1881	6	5	1	0	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	c0004	1881	4	3	0	0	0	1	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	c0005	1881	4	4	0	0	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	c0006	1881	2	0	0	2	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	c0007	1881	1	0	1	0	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	c0008	1881	1	0	0	1	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	c0009	1881	1	0	0	0	0	1	copy fasta	TESK1	chr9	35600262	35615033
TESK2_chr1_45338883_45496163	1/0	c0001	1716	195	51	37	82	7	17	copy fasta	TESK2	chr1	45338883	45496163