JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BANP_chr16_87946434_88082316	0/0	c0029	1593	1	0	0	0	0	1	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0030	1593	1	0	1	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0031	1593	1	1	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0032	1593	1	1	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	c0033	1593	1	0	0	1	0	0	copy fasta	BANP	chr16	87946434	88082316
BAP1_chr3_52396008_52415008	1/1	c0001	2190	309	65	61	136	10	35	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	c0002	2190	13	9	1	3	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	c0003	2190	12	12	0	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	c0004	2190	5	0	0	4	0	1	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	c0005	2190	4	4	0	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	c0006	2190	1	0	0	1	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	c0007	2190	1	1	0	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	c0008	2190	1	0	0	1	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	c0009	2190	1	1	0	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	c0010	2190	1	0	0	1	0	0	copy fasta	BAP1	chr3	52396008	52415008
BARD1_chr2_214720646_214814683	0/0	c0001	2334	88	9	20	43	4	12	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0002	2334	69	11	11	35	2	10	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/1	c0003	2334	63	1	8	46	0	7	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	1/0	c0004	2334	29	24	2	0	0	2	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0005	2313	23	1	4	13	0	5	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0006	2334	16	8	1	6	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0007	2334	12	6	5	0	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0008	2334	8	0	0	8	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0009	2334	6	5	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0010	2334	5	1	3	0	1	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0011	2334	5	5	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0012	2334	5	5	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0013	2334	4	4	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0014	2334	4	3	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0015	2334	4	0	3	0	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0016	2313	2	0	0	1	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0017	2334	2	0	2	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0018	2334	2	0	2	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0019	2334	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0020	2334	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0021	2334	1	0	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0022	2334	1	0	0	0	1	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0023	2334	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0024	2313	1	0	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0025	2334	1	0	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0026	2334	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0027	2334	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0028	2334	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0029	2334	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0030	2334	1	0	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0031	2334	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0032	2334	1	0	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	c0033	2334	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARHL1_chr9_132577606_132595252	1/1	c0001	984	465	92	86	220	17	48	copy fasta	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	c0002	984	2	2	0	0	0	0	copy fasta	BARHL1	chr9	132577606	132595252