JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TESK2_chr1_45338883_45496163	0/0	c0002	1716	65	18	9	27	4	7	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	c0003	1716	10	0	0	10	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/1	c0004	1716	8	0	1	0	5	1	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	c0005	1716	2	0	0	2	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	c0006	1716	1	0	0	0	0	1	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	c0007	1716	1	1	0	0	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	c0008	1716	1	0	0	1	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	c0009	1716	1	0	0	1	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	c0010	1716	1	0	0	1	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	c0011	1716	1	0	1	0	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESMIN_chr11_68702440_68756520	1/1	c0001	1527	277	75	57	116	3	24	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	c0002	1527	12	2	4	2	3	1	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	c0003	1527	3	0	0	3	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	c0004	1527	2	2	0	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	c0005	1527	1	1	0	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	c0006	1527	1	0	0	1	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	c0007	1527	1	0	1	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	c0008	1527	1	0	0	0	0	1	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	c0009	1527	1	1	0	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	c0010	1527	1	1	0	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESPA1_chr12_54943015_54989762	1/0	c0001	1566	165	55	30	60	5	14	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0002	1566	95	5	6	71	1	12	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0003	1566	31	13	11	5	1	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/1	c0004	1566	21	2	1	14	2	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0005	1566	12	0	7	0	4	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0006	1566	11	1	5	4	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0007	1566	8	0	0	8	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0008	1566	4	4	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0009	1566	4	3	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0010	1566	3	0	3	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0011	1566	2	0	0	1	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0012	1566	2	1	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0013	1566	2	0	0	0	0	2	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0014	1566	2	0	0	2	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0015	1566	2	1	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0016	1566	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0017	1566	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0018	1566	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0019	1566	1	0	0	0	1	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0020	1566	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0021	1566	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0022	1566	1	0	0	0	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0023	1566	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0024	1578	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0025	1566	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0026	1566	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	c0027	1566	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TES_chr7_116205539_116263783	1/1	c0001	1266	199	37	43	83	8	26	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	c0002	1266	172	40	24	91	6	11	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	c0003	1266	10	0	0	10	0	0	copy fasta	TES	chr7	116205539	116263783