JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TES_chr7_116205539_116263783	0/0	c0004	1266	3	0	0	0	0	3	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	c0005	1266	1	0	1	0	0	0	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	c0006	1266	1	1	0	0	0	0	copy fasta	TES	chr7	116205539	116263783
TET1_chr10_68555337_68699487	0/0	c0001	6411	90	22	14	40	4	10	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/1	c0002	6411	57	0	7	35	3	11	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0003	6411	33	1	4	22	0	6	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	1/0	c0004	6411	18	5	6	4	0	2	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0005	6411	9	4	2	0	0	3	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0006	6411	8	6	2	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0007	6411	8	0	1	7	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0008	6411	6	6	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0009	6411	5	4	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0010	6411	4	3	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0011	6411	3	0	1	0	2	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0012	6411	3	3	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0013	6411	3	1	2	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0014	6411	2	0	2	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0015	6411	2	2	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0016	6411	2	2	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0017	6411	2	2	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0018	6411	2	2	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0019	6411	2	2	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0020	6411	2	0	0	0	1	1	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0021	6411	2	1	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0022	6411	2	0	2	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0023	6411	2	0	0	2	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0024	6411	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0025	6411	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0026	6411	1	0	0	0	0	1	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0027	6411	1	0	0	0	0	1	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0028	6411	1	0	0	1	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0029	6411	1	0	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0030	6411	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0031	6411	1	0	0	0	0	1	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0032	6411	1	0	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0033	6411	1	0	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0034	6411	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0035	6411	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0036	6411	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0037	6411	1	0	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	c0038	6411	1	0	0	1	0	0	copy fasta	TET1	chr10	68555337	68699487
TET2_chr4_105141876_105284803	1/0	c0001	6009	123	16	31	50	9	16	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0002	6009	59	2	10	31	4	12	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0003	6009	44	0	5	37	1	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0004	6009	33	16	3	14	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/1	c0005	6009	20	7	7	3	0	2	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0006	6009	17	16	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0007	6009	7	6	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0008	6009	6	5	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0009	6009	4	1	1	0	0	2	copy fasta	TET2	chr4	105141876	105284803