JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TET2_chr4_105141876_105284803	0/0	c0010	6009	4	4	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0011	6009	3	3	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0012	6009	3	0	0	3	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0013	6009	3	0	0	2	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0014	6009	2	2	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0015	6009	2	0	1	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0016	6009	2	2	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0017	6009	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0018	6009	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0019	6009	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0020	5959	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0021	6009	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0022	6009	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0023	6009	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0024	6009	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0025	6009	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0026	6009	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0027	6009	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0028	6009	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0029	6009	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0030	6009	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0031	6009	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	c0032	6009	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET3_chr2_73979910_74113176	1/1	c0001	5388	119	10	23	64	6	14	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0002	5388	90	41	20	19	4	6	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0003	5388	8	6	2	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0004	5388	5	5	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0005	5388	5	0	3	0	2	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0006	5388	3	0	3	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0007	5388	2	2	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0008	5388	2	2	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0009	5388	2	2	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0010	5388	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0011	5388	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0012	5388	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0013	5388	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0014	5388	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0015	5388	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0016	5388	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0017	5388	1	0	1	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0018	5388	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0019	5388	1	0	0	0	0	1	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0020	5388	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0021	5388	1	0	0	0	0	1	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0022	5388	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0023	5388	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0024	5388	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	c0025	5388	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TEX101_chr19_43409890_43423597	1/1	c0001	750	279	90	50	97	12	28	copy fasta	TEX101	chr19	43409890	43423597
TEX101_chr19_43409890_43423597	0/0	c0002	750	124	4	21	81	5	13	copy fasta	TEX101	chr19	43409890	43423597