JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEX101_chr19_43409890_43423597	0/0	c0003	750	6	0	5	0	1	0	copy fasta	TEX101	chr19	43409890	43423597
TEX101_chr19_43409890_43423597	0/0	c0004	750	2	2	0	0	0	0	copy fasta	TEX101	chr19	43409890	43423597
TEX101_chr19_43409890_43423597	0/0	c0005	750	1	0	0	0	0	1	copy fasta	TEX101	chr19	43409890	43423597
TEX10_chr9_100297084_100357942	0/0	c0001	2790	126	46	29	35	6	10	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	1/1	c0002	2790	110	36	33	25	6	8	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	c0003	2790	4	4	0	0	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	c0004	2790	1	0	0	1	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	c0005	2790	1	1	0	0	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	c0006	2790	1	0	0	1	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	c0007	2790	1	1	0	0	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	c0008	2790	1	0	0	1	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	c0009	2790	1	0	0	1	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX11_chrX_70523940_70913711	0/1	c0001	2778	148	44	26	53	7	17	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	c0002	2778	34	14	4	12	0	4	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	c0003	2778	22	10	1	10	0	1	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	1/0	c0004	2778	6	5	0	0	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	c0005	2778	4	0	4	0	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	c0006	2778	4	0	0	4	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	c0007	2778	3	0	0	3	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	c0008	2778	2	0	0	2	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	c0009	2778	2	0	0	0	0	2	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	c0010	2777	1	0	0	1	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	c0011	2778	1	1	0	0	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	c0012	2787	1	0	0	1	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	c0013	2778	1	0	0	1	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX12_chr11_112162372_112177556	1/1	c0001	372	328	84	64	137	11	30	copy fasta	TEX12	chr11	112162372	112177556
TEX12_chr11_112162372_112177556	0/0	c0002	372	58	5	17	27	3	6	copy fasta	TEX12	chr11	112162372	112177556
TEX12_chr11_112162372_112177556	0/0	c0003	372	1	0	1	0	0	0	copy fasta	TEX12	chr11	112162372	112177556
TEX12_chr11_112162372_112177556	0/0	c0004	372	1	1	0	0	0	0	copy fasta	TEX12	chr11	112162372	112177556
TEX13A_chrX_105213929_105225694	1/1	c0001	1230	279	58	46	132	12	29	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0002	1230	4	4	0	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0003	1230	4	4	0	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0004	1230	2	2	0	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0005	1230	2	1	1	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0006	1230	1	1	0	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0007	1230	1	0	0	0	0	1	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0008	1230	1	1	0	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0009	1230	1	1	0	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0010	1230	1	0	0	0	1	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0011	1230	1	0	0	0	0	1	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0012	1230	1	0	0	1	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0013	1230	1	0	0	0	0	1	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	c0014	1230	1	0	0	1	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13B_chrX_107975864_107987370	0/0	c0000	0	1	1	0	0	0	0	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	1/1	c0001	939	256	60	51	105	12	26	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	0/0	c0002	939	52	17	6	28	1	0	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	0/0	c0003	939	2	0	0	0	0	2	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	0/0	c0004	939	1	0	0	1	0	0	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	0/0	c0005	939	1	0	1	0	0	0	copy fasta	TEX13B	chrX	107975864	107987370
TEX13C_chrX_125314871_125330214	1/1	c0001	2982	181	9	33	99	12	26	copy fasta	TEX13C	chrX	125314871	125330214