JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEX13C_chrX_125314871_125330214	0/0	c0002	2982	31	0	4	24	0	3	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0003	2988	30	27	3	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0004	2982	14	14	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0005	2919	11	8	3	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0006	2982	9	7	2	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0007	2982	3	0	0	0	1	2	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0008	2982	2	2	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0009	2982	2	0	2	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0010	2982	2	0	0	2	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0011	2982	1	0	1	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0012	2982	1	0	1	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0013	2982	1	0	0	1	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0014	2982	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0015	2982	1	0	1	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0016	2982	1	0	0	0	0	1	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0017	2862	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0018	2982	1	0	0	1	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0019	2983	1	0	0	1	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0020	2982	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0021	2856	1	0	0	1	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0022	2982	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0023	2982	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0024	2982	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0025	2982	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0026	2982	1	0	0	1	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0027	2982	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	c0028	2982	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13D_chrX_124327660_124341863	0/0	c0001	2145	104	1	29	54	4	16	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	1/1	c0002	2145	68	19	13	27	4	3	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0003	2145	48	0	3	42	0	3	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0004	2145	29	23	6	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0005	1959	26	4	4	9	1	8	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0006	2145	13	10	3	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0007	2145	9	6	0	2	0	1	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0008	1959	7	2	1	3	0	1	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0009	2145	7	0	0	7	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0010	2145	2	0	0	2	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0011	2145	2	2	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0012	1773	2	0	0	0	2	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0013	2145	2	2	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0014	2145	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0015	2144	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0016	2145	1	0	0	0	0	1	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0017	1959	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0018	2145	1	0	0	0	0	1	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0019	2143	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0020	1773	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0021	2146	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0022	2145	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0023	2145	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863