JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEX13D_chrX_124327660_124341863	0/0	c0024	2146	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0025	2145	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0026	2145	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	c0027	2145	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX14_chr17_58551678_58697045	0/1	c0001	4356	144	45	31	53	4	10	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0002	4356	78	24	6	36	2	10	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0003	4356	46	1	10	25	3	7	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0004	4356	21	3	12	0	3	3	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0005	4356	7	1	1	0	2	3	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	1/0	c0006	4356	5	4	0	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0007	4356	3	1	2	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0008	4356	3	3	0	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0009	4356	2	2	0	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0010	4356	2	0	0	0	0	2	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0011	4356	1	0	0	1	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0012	4356	1	0	0	1	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0013	4356	1	0	1	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0014	4356	1	1	0	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0015	4356	1	1	0	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0016	4356	1	1	0	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0017	4356	1	1	0	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0018	4356	1	0	1	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0019	4346	1	0	0	1	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0020	4356	1	0	0	0	0	1	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0021	4356	1	0	0	1	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0022	4356	1	0	0	0	0	1	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	c0023	4356	1	0	0	0	0	1	copy fasta	TEX14	chr17	58551678	58697045
TEX15_chr8_30826544_30918008	0/1	c0001	9519	98	9	26	40	4	18	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0002	9519	33	9	1	14	3	6	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0003	9519	28	18	6	3	0	1	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0004	9519	24	0	0	20	0	4	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0005	9519	19	0	13	6	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0006	9519	8	0	3	0	1	4	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0007	9519	7	7	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0008	9519	5	5	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0009	9519	5	5	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0010	9519	4	2	2	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0011	9519	4	0	2	2	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0012	9519	4	4	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0013	9519	3	3	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0014	9519	3	0	3	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0015	9519	3	3	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0016	9519	2	2	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0017	9519	2	0	0	2	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0018	9519	2	2	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0019	9519	2	2	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0020	9519	2	0	0	2	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0021	9519	2	2	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0022	9519	2	2	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0023	9519	2	0	0	0	0	2	copy fasta	TEX15	chr8	30826544	30918008