JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEX15_chr8_30826544_30918008	0/0	c0024	9519	1	0	0	0	1	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0025	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0026	9519	1	0	1	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0027	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0028	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0029	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0030	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0031	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0032	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0033	9519	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0034	9519	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0035	9519	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0036	9519	1	0	1	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0037	9519	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0038	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0039	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	1/0	c0040	9519	1	0	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0041	9519	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0042	9519	1	0	1	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0043	9519	1	0	1	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0044	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0045	9519	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0046	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0047	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0048	9519	1	0	0	0	0	1	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0049	9519	1	0	0	0	0	1	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0050	9519	1	0	0	0	0	1	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0051	9519	1	0	0	0	1	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0052	9519	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	c0053	9519	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX19_chr17_82354247_82368775	1/1	c0001	495	365	85	64	163	16	35	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	c0002	495	8	2	5	0	0	1	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	c0003	495	4	4	0	0	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	c0004	495	1	1	0	0	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	c0005	495	1	0	0	1	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	c0006	495	1	0	1	0	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX22_chr14_105393538_105418859	1/1	c0001	453	333	66	76	133	16	40	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	c0002	453	14	13	1	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	c0003	453	8	0	0	6	0	2	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	c0004	454	5	5	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	c0005	453	4	4	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	c0006	453	1	0	0	1	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	c0007	453	1	1	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	c0008	430	1	0	1	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	c0009	453	1	1	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX261_chr2_70980942_70999873	1/1	c0001	591	276	35	42	152	7	38	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	c0002	591	136	55	31	31	7	12	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	c0003	591	7	0	3	4	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	c0004	591	6	4	2	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	c0005	591	4	0	0	4	0	0	copy fasta	TEX261	chr2	70980942	70999873