JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEX33_chr22_36986125_37012851	0/0	c0003	843	48	13	18	15	0	2	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0004	843	5	5	0	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0005	843	2	2	0	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0006	843	2	0	0	2	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0007	843	1	0	0	1	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0008	843	1	0	1	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0009	843	1	0	1	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0010	843	1	0	0	1	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0011	843	1	0	1	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0012	843	1	0	0	0	0	1	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0013	843	1	0	0	1	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	c0014	843	1	1	0	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX35_chr1_178508109_178527650	1/1	c0001	702	232	61	38	100	6	25	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	c0002	702	141	10	32	87	4	8	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	c0003	702	11	9	2	0	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	c0004	702	10	10	0	0	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	c0005	702	2	2	0	0	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	c0006	702	1	1	0	0	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	c0007	702	1	0	0	1	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	c0008	702	1	0	0	0	0	1	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	c0009	702	1	1	0	0	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX36_chr10_125650694_125688163	1/1	c0001	561	398	94	72	172	14	44	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	c0002	561	3	3	0	0	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	c0003	561	3	1	2	0	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	c0004	561	2	0	0	2	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	c0005	561	1	0	0	1	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	c0006	561	1	0	1	0	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	c0007	561	1	0	1	0	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	c0008	561	1	0	0	1	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX37_chr2_88519649_88534585	1/1	c0001	543	371	70	74	159	16	50	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	c0002	543	7	7	0	0	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	c0003	543	6	6	0	0	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	c0004	543	6	0	0	6	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	c0005	543	4	4	0	0	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	c0006	543	4	4	0	0	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	c0007	543	1	0	0	1	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	c0008	543	1	0	0	1	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	c0009	543	1	1	0	0	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	c0010	543	1	0	0	1	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX38_chr1_46666854_46678594	1/1	c0001	621	149	27	39	47	14	20	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	c0002	621	121	48	4	59	1	9	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	c0003	621	121	16	24	66	1	14	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	c0004	621	17	0	4	11	0	2	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	c0005	621	5	0	1	4	0	0	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	c0006	621	3	3	0	0	0	0	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	c0007	621	1	0	0	1	0	0	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	c0008	621	1	0	0	0	0	1	copy fasta	TEX38	chr1	46666854	46678594
TEX43_chr5_126626705_126641284	1/1	c0001	405	375	47	74	192	14	46	copy fasta	TEX43	chr5	126626705	126641284
TEX43_chr5_126626705_126641284	0/0	c0002	405	47	41	6	0	0	0	copy fasta	TEX43	chr5	126626705	126641284
TEX43_chr5_126626705_126641284	0/0	c0003	405	1	0	0	1	0	0	copy fasta	TEX43	chr5	126626705	126641284