JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEX43_chr5_126626705_126641284	0/0	c0004	405	1	0	0	1	0	0	copy fasta	TEX43	chr5	126626705	126641284
TEX44_chr2_231587864_231599276	0/1	c0001	1188	350	75	63	168	10	33	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	1/0	c0002	1188	19	6	3	0	4	5	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0003	1192	13	0	0	13	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0004	1188	11	1	6	1	2	1	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0005	1188	9	1	0	7	0	1	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0006	1184	9	0	1	8	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0007	1188	6	6	0	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0008	1188	5	4	1	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0009	1188	3	0	2	0	1	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0010	1188	2	0	0	0	0	2	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0011	1207	2	2	0	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0012	1188	1	1	0	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0013	1188	1	1	0	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0014	1188	1	0	0	0	0	1	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0015	1188	1	0	0	0	1	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0016	1188	1	0	0	1	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0017	1188	1	0	0	0	0	1	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0018	1188	1	0	0	1	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0019	1188	1	1	0	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	c0020	1188	1	0	0	1	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX45_chr19_7492548_7513450	1/0	c0001	1518	166	18	34	90	3	20	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0002	1518	80	21	14	26	7	12	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/1	c0003	1518	80	11	20	33	6	9	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0004	1518	25	8	0	16	0	1	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0005	1518	15	15	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0006	1518	13	8	3	0	0	2	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0007	1518	11	0	0	11	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0008	1518	10	0	0	10	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0009	1518	7	0	1	6	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0010	1518	7	7	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0011	1518	4	0	0	4	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0012	1518	3	0	2	0	1	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0013	1518	3	3	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0014	1518	2	0	1	0	1	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0015	1518	2	2	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0016	1518	1	0	0	0	0	1	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0017	1518	1	0	0	0	0	1	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0018	1518	1	0	1	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0019	1518	1	1	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0020	1518	1	0	0	1	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0021	1518	1	1	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0022	1518	1	1	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	c0023	1518	1	0	0	1	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX46_chr1_23005834_23020852	1/1	c0001	366	406	75	77	198	12	42	copy fasta	TEX46	chr1	23005834	23020852
TEX46_chr1_23005834_23020852	0/0	c0002	366	27	22	5	0	0	0	copy fasta	TEX46	chr1	23005834	23020852
TEX46_chr1_23005834_23020852	0/0	c0003	366	1	1	0	0	0	0	copy fasta	TEX46	chr1	23005834	23020852
TEX47_chr7_88789106_88800737	1/1	c0001	762	334	56	60	171	13	32	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	c0002	762	61	19	16	19	4	3	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	c0003	762	40	8	3	19	1	9	copy fasta	TEX47	chr7	88789106	88800737