JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BARHL1_chr9_132577606_132595252	0/0	c0003	984	2	2	0	0	0	0	copy fasta	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	c0004	984	1	1	0	0	0	0	copy fasta	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	c0005	984	1	0	0	0	1	0	copy fasta	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	c0006	984	1	1	0	0	0	0	copy fasta	BARHL1	chr9	132577606	132595252
BARHL2_chr1_90706539_90722302	1/1	c0001	1164	435	93	74	208	18	40	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	c0002	1164	2	0	0	2	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	c0003	1164	2	2	0	0	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	c0004	1164	1	0	0	0	0	1	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	c0005	1164	1	0	0	1	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	c0006	1164	1	1	0	0	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	c0007	1164	1	0	0	1	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	c0008	1164	1	0	0	1	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	c0009	1164	1	0	0	0	0	1	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	c0010	1164	1	0	0	1	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARX1_chr9_93946627_93960355	1/0	c0001	765	284	65	44	141	7	26	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	c0002	765	76	22	20	19	6	9	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/1	c0003	765	41	2	9	16	3	10	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	c0004	765	4	2	0	1	0	1	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	c0005	765	1	0	1	0	0	0	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	c0006	765	1	0	0	1	0	0	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	c0007	765	1	1	0	0	0	0	copy fasta	BARX1	chr9	93946627	93960355
BARX2_chr11_129370848_129457279	1/1	c0001	840	259	64	56	106	12	19	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	c0002	840	130	23	13	73	2	19	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	c0003	840	8	7	1	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	c0004	840	2	2	0	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	c0005	840	1	0	0	1	0	0	copy fasta	BARX2	chr11	129370848	129457279
BASP1_chr5_17212631_17281834	1/1	c0001	684	350	82	68	143	16	39	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	c0002	684	7	7	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	c0003	684	4	3	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	c0004	684	3	3	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	c0005	684	3	0	0	2	0	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	c0006	684	1	0	0	1	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	c0007	684	1	0	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	c0008	684	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BATF2_chr11_64982945_65001971	1/1	c0001	825	393	91	63	184	17	36	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	c0002	825	4	0	3	0	1	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	c0003	825	2	0	0	0	0	2	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	c0004	825	1	0	0	1	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	c0005	825	1	0	0	0	0	1	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	c0006	825	1	1	0	0	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	c0007	825	1	0	0	0	0	1	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	c0008	825	1	0	0	1	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF3_chr1_212681417_212704840	1/1	c0001	384	377	67	73	194	17	24	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	c0002	384	74	23	9	27	1	14	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	c0003	384	4	0	0	0	0	4	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	c0004	390	3	3	0	0	0	0	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	c0005	384	1	1	0	0	0	0	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	c0006	384	1	0	0	1	0	0	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	c0007	384	1	0	0	1	0	0	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	c0008	384	1	0	0	1	0	0	copy fasta	BATF3	chr1	212681417	212704840