JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEX47_chr7_88789106_88800737	0/0	c0004	762	6	6	0	0	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	c0005	762	3	0	0	3	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	c0006	762	3	3	0	0	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	c0007	762	2	2	0	0	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	c0008	762	1	0	0	1	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	c0009	762	1	0	1	0	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	c0010	762	1	0	0	1	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX48_chr9_114661434_114687192	0/1	c0001	363	139	35	35	51	6	11	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	c0002	363	114	15	18	68	1	12	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	1/0	c0003	363	82	5	12	45	5	14	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	c0004	363	46	4	3	30	0	9	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	c0005	363	30	28	1	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	c0006	363	5	4	1	0	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	c0007	363	1	0	0	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	c0008	363	1	0	0	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	c0009	363	1	0	0	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	c0010	363	1	0	0	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	c0011	363	1	1	0	0	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	c0012	363	1	0	0	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX49_chr12_48722435_48770790	1/1	c0001	396	317	81	64	118	14	38	copy fasta	TEX49	chr12	48722435	48770790
TEX49_chr12_48722435_48770790	0/0	c0002	396	2	0	2	0	0	0	copy fasta	TEX49	chr12	48722435	48770790
TEX49_chr12_48722435_48770790	0/0	c0003	396	1	0	0	0	0	1	copy fasta	TEX49	chr12	48722435	48770790
TEX49_chr12_48722435_48770790	0/0	c0004	396	1	1	0	0	0	0	copy fasta	TEX49	chr12	48722435	48770790
TEX49_chr12_48722435_48770790	0/0	c0005	396	1	0	0	0	0	1	copy fasta	TEX49	chr12	48722435	48770790
TEX50_chr1_173630338_173642130	1/1	c0001	534	402	87	72	185	14	42	copy fasta	TEX50	chr1	173630338	173642130
TEX50_chr1_173630338_173642130	0/0	c0002	534	1	1	0	0	0	0	copy fasta	TEX50	chr1	173630338	173642130
TEX50_chr1_173630338_173642130	0/0	c0003	534	1	0	0	1	0	0	copy fasta	TEX50	chr1	173630338	173642130
TEX51_chr2_126893890_126907097	1/1	c0001	501	328	66	58	154	15	33	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	c0002	501	41	17	4	19	0	1	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	c0003	501	13	0	7	0	1	5	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	c0004	501	9	0	3	5	0	1	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	c0005	501	3	3	0	0	0	0	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	c0006	501	2	0	0	2	0	0	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	c0007	501	2	2	0	0	0	0	copy fasta	TEX51	chr2	126893890	126907097
TEX52_chr12_2844046_2862039	1/1	c0001	918	394	65	75	190	14	48	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0002	918	17	16	1	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0003	918	5	0	0	5	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0004	918	4	3	1	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0005	918	3	3	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0006	918	2	2	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0007	918	1	1	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0008	918	1	1	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0009	918	1	1	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0010	918	1	0	0	0	0	1	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0011	918	1	0	0	0	0	1	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0012	918	1	1	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0013	918	1	0	0	1	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0014	918	1	0	1	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	c0015	918	1	1	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX53_chr9_114651304_114662805	1/1	c0001	213	400	96	70	176	14	42	copy fasta	TEX53	chr9	114651304	114662805