JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TEX54_chr11_62827321_62837841	1/1	c0001	375	410	90	65	193	16	44	copy fasta	TEX54	chr11	62827321	62837841
TEX54_chr11_62827321_62837841	0/0	c0002	375	2	2	0	0	0	0	copy fasta	TEX54	chr11	62827321	62837841
TEX54_chr11_62827321_62837841	0/0	c0003	375	1	0	1	0	0	0	copy fasta	TEX54	chr11	62827321	62837841
TEX54_chr11_62827321_62837841	0/0	c0004	375	1	0	0	1	0	0	copy fasta	TEX54	chr11	62827321	62837841
TEX55_chr3_119141165_119156456	0/0	c0001	1611	85	2	20	50	5	8	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/1	c0002	1611	78	11	15	31	2	18	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0003	1611	68	7	4	47	3	7	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0004	1611	67	24	21	12	3	7	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0005	1611	53	9	11	31	2	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0006	1608	39	0	4	35	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	1/0	c0007	1611	25	16	4	0	1	3	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0008	1611	15	0	0	15	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0009	1611	8	8	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0010	1611	7	7	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0011	1611	3	0	0	3	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0012	1611	3	3	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0013	1611	3	0	0	3	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0014	1611	2	0	0	2	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0015	1611	2	2	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0016	1611	2	2	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0017	1611	2	2	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0018	1611	1	0	0	1	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0019	1611	1	1	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0020	1611	1	0	1	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0021	1611	1	1	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0022	1611	1	0	0	0	0	1	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	c0023	1611	1	1	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX9_chr15_56360426_56435154	1/1	c0001	1176	366	84	63	172	14	31	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	c0002	1176	4	4	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	c0003	1176	2	2	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	c0004	1176	2	0	2	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	c0005	1176	1	0	1	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	c0006	1176	1	1	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	c0007	1176	1	0	0	0	0	1	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	c0008	963	1	0	0	1	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	c0009	1176	1	0	0	1	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	c0010	1176	1	1	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TFAM_chr10_58380410_58404220	0/0	c0001	741	382	92	67	174	14	35	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	c0002	741	46	1	8	29	4	4	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	c0003	741	3	3	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	c0004	741	2	0	1	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	c0005	741	1	0	0	1	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAP2A_chr6_10391677_10420074	1/1	c0001	1320	316	82	69	124	11	28	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	c0002	1320	38	9	1	23	1	4	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	c0003	1320	5	5	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	c0004	1320	4	4	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	c0005	1320	3	0	0	3	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	c0006	1320	1	0	0	1	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	c0007	1320	1	0	0	1	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2B_chr6_50813871_50852619	1/1	c0001	1383	375	87	71	157	16	42	copy fasta	TFAP2B	chr6	50813871	50852619