JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TFAP2B_chr6_50813871_50852619	0/0	c0002	1383	2	2	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	c0003	1383	2	2	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	c0004	1383	1	0	0	1	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	c0005	1383	1	0	1	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	c0006	1383	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2C_chr20_56624306_56644283	1/1	c0001	1353	324	89	59	131	11	32	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	c0002	1353	18	0	5	0	3	10	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	c0003	1353	6	6	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	c0004	1353	4	0	0	4	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	c0005	1353	3	0	3	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	c0006	1353	1	0	1	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	c0007	1353	1	1	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	c0008	1353	1	0	0	1	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	c0009	1353	1	0	0	1	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	c0010	1353	1	0	0	1	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2D_chr6_50708526_50778033	1/1	c0001	1359	295	84	61	100	12	36	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	c0002	1359	31	0	2	25	2	2	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	c0003	1359	5	5	0	0	0	0	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	c0004	1359	1	0	1	0	0	0	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	c0005	1359	1	1	0	0	0	0	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	c0006	1359	1	0	0	1	0	0	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2E_chr1_35568314_35600328	1/1	c0001	1329	246	59	46	96	13	30	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0002	1329	97	19	15	60	1	2	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0003	1329	9	9	0	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0004	1329	4	4	0	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0005	1329	3	3	0	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0006	1329	2	2	0	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0007	1329	1	1	0	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0008	1329	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0009	1329	1	1	0	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0010	1329	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0011	1329	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0012	1329	1	0	1	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0013	1329	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0014	1329	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	c0015	1329	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP4_chr16_4252186_4278023	0/1	c0001	1017	265	64	51	121	5	23	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	1/0	c0002	1017	121	14	25	55	9	17	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	c0003	1017	9	9	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	c0004	1017	4	4	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	c0005	1017	3	3	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	c0006	1017	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	c0007	1017	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFB1M_chr6_155251134_155319484	0/0	c0001	1041	232	50	43	108	5	26	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	1/1	c0002	1041	109	31	27	34	5	10	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	c0003	1041	2	0	0	2	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	c0004	1041	2	2	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	c0005	1041	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	c0006	1041	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	c0007	1041	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484