JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TFB2M_chr1_246535561_246571261	1/0	c0001	1191	204	35	24	122	3	19	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/1	c0002	1191	178	44	38	67	11	17	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0003	1191	40	15	17	0	3	5	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0004	1191	7	0	0	7	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0005	1191	3	0	0	3	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0006	1191	3	3	0	0	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0007	1191	3	0	0	3	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0008	1191	2	0	2	0	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0009	1191	1	0	0	1	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0010	1191	1	0	1	0	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0011	1191	1	0	0	1	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0012	1191	1	1	0	0	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0013	1191	1	0	0	0	1	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	c0014	1191	1	0	0	0	0	1	copy fasta	TFB2M	chr1	246535561	246571261
TFCP2L1_chr2_121211587_121290202	1/0	c0001	1440	137	35	24	69	1	7	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/1	c0002	1440	123	37	17	44	6	18	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	c0003	1440	89	3	24	48	5	9	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	c0004	1440	13	12	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	c0005	1440	4	3	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	c0006	1440	4	0	0	2	0	2	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	c0007	1440	3	0	0	3	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	c0008	1440	2	0	0	0	0	2	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	c0009	1440	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	c0010	1440	1	0	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	c0011	1440	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2_chr12_51088656_51178135	1/1	c0001	1509	347	92	72	131	12	38	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	c0002	1509	1	0	0	1	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFDP1_chr13_113579753_113646473	1/1	c0001	1233	314	86	66	108	14	38	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	c0002	1233	17	1	0	15	0	1	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	c0003	1233	13	5	0	8	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	c0004	1233	1	0	0	0	0	1	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	c0005	1248	1	0	0	1	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	c0006	1233	1	1	0	0	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	c0007	1233	1	1	0	0	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP2_chr3_141939428_142154544	1/1	c0001	1341	242	77	43	92	8	20	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	c0002	1341	10	5	3	0	0	2	copy fasta	TFDP2	chr3	141939428	142154544
TFDP3_chrX_133211662_133223354	1/1	c0001	1218	224	42	42	106	8	24	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	c0002	1218	15	15	0	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	c0003	1218	6	6	0	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	c0004	1218	4	0	4	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	c0005	1218	2	0	0	2	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	c0006	1218	1	0	0	0	1	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	c0007	1217	1	0	0	1	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	c0008	1247	1	0	0	1	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	c0009	1218	1	1	0	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	c0010	1218	1	0	1	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFE3_chrX_49023726_49048357	1/0	c0001	1728	196	72	29	77	2	15	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/1	c0002	1728	51	1	20	9	7	13	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	c0003	1728	2	2	0	0	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	c0004	1729	2	0	1	0	0	1	copy fasta	TFE3	chrX	49023726	49048357