JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TFE3_chrX_49023726_49048357	0/0	c0005	1728	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	c0006	1730	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	c0007	1729	1	0	0	0	0	1	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	c0008	1733	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	c0009	1728	1	1	0	0	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	c0010	1728	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	c0011	1728	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	c0012	1731	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	c0013	1729	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFEB_chr6_41678978_41740608	0/1	c0001	1431	125	49	31	38	1	5	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	1/0	c0002	1431	96	7	16	58	4	10	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	c0003	1431	91	7	23	39	5	17	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	c0004	1431	46	5	8	25	2	6	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	c0005	1431	35	21	2	3	2	7	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	c0006	1431	6	0	0	6	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	c0007	1431	1	1	0	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	c0008	1431	1	0	1	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	c0009	1431	1	0	0	1	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	c0010	1431	1	1	0	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	c0011	1431	1	1	0	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	c0012	1431	1	0	0	0	0	1	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	c0013	1431	1	0	1	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEC_chr7_115930152_116035763	1/1	c0001	1044	366	77	68	164	14	41	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	c0002	1044	7	6	1	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	c0003	1044	4	0	1	0	0	3	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	c0004	1044	4	4	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	c0005	1044	3	3	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	c0006	1044	3	0	3	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	c0007	1044	2	0	0	0	0	2	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	c0008	1044	2	2	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	c0009	1044	1	0	0	1	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	c0010	1044	1	0	0	1	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	c0011	1044	1	0	1	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFF1_chr21_42357282_42371535	1/1	c0001	255	446	79	80	223	15	47	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	c0002	255	20	16	3	0	0	1	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	c0003	255	2	2	0	0	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	c0004	255	2	0	2	0	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	c0005	255	2	0	1	0	1	0	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	c0006	255	1	1	0	0	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	c0007	255	1	0	0	1	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF2_chr21_42341357_42355994	1/1	c0001	390	447	95	84	204	12	50	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/0	c0002	390	2	0	0	2	0	0	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/0	c0003	390	2	1	1	0	0	0	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/0	c0004	390	1	1	0	0	0	0	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/0	c0005	390	1	0	1	0	0	0	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/0	c0006	390	1	1	0	0	0	0	copy fasta	TFF2	chr21	42341357	42355994
TFF3_chr21_42306667_42320409	1/1	c0001	243	448	93	85	202	18	48	copy fasta	TFF3	chr21	42306667	42320409
TFF3_chr21_42306667_42320409	0/0	c0002	243	2	2	0	0	0	0	copy fasta	TFF3	chr21	42306667	42320409
TFF3_chr21_42306667_42320409	0/0	c0003	243	1	1	0	0	0	0	copy fasta	TFF3	chr21	42306667	42320409
TFF3_chr21_42306667_42320409	0/0	c0004	243	1	0	1	0	0	0	copy fasta	TFF3	chr21	42306667	42320409