JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TFG_chr3_100704494_100753964	0/1	c0001	1203	206	38	42	87	13	25	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	1/0	c0002	1203	123	31	21	61	2	7	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	c0003	1203	11	10	0	0	1	0	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	c0004	1203	9	8	1	0	0	0	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	c0005	1203	1	1	0	0	0	0	copy fasta	TFG	chr3	100704494	100753964
TFIP11_chr22_26486240_26517473	0/1	c0001	2514	285	41	50	150	11	32	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	1/0	c0002	2514	89	32	12	38	1	5	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0003	2514	10	9	1	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0004	2514	7	0	2	5	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0005	2514	4	1	3	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0006	2514	4	4	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0007	2514	3	0	3	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0008	2514	3	1	1	0	1	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0009	2514	2	0	0	2	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0010	2514	2	0	0	2	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0011	2514	2	0	0	0	1	1	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0012	2514	1	0	1	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0013	2514	1	0	1	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0014	2514	1	1	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0015	2514	1	1	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0016	2514	1	1	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0017	2514	1	1	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0018	2514	1	0	0	1	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0019	2514	1	0	0	1	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	c0020	2514	1	0	0	1	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFPI2_chr7_93880396_93895753	1/1	c0001	708	351	75	57	163	14	40	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	c0002	708	74	9	10	48	0	7	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	c0003	708	1	0	0	0	0	1	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	c0004	708	1	0	1	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	c0005	708	1	0	0	1	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	c0006	708	1	1	0	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	c0007	708	1	1	0	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI_chr2_187459230_187559435	1/1	c0001	915	325	77	54	151	7	34	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	c0002	915	15	13	2	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	c0003	915	2	0	0	2	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	c0004	915	1	0	0	0	1	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	c0005	915	1	0	0	1	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPT_chr19_54102020_54120657	0/1	c0001	762	422	94	84	192	12	39	copy fasta	TFPT	chr19	54102020	54120657
TFPT_chr19_54102020_54120657	0/0	c0002	762	3	3	0	0	0	0	copy fasta	TFPT	chr19	54102020	54120657
TFPT_chr19_54102020_54120657	0/0	c0003	762	2	0	2	0	0	0	copy fasta	TFPT	chr19	54102020	54120657
TFPT_chr19_54102020_54120657	0/0	c0004	762	1	0	0	0	0	1	copy fasta	TFPT	chr19	54102020	54120657
TFPT_chr19_54102020_54120657	0/0	c0005	762	1	1	0	0	0	0	copy fasta	TFPT	chr19	54102020	54120657
TFR2_chr7_100615420_100646552	1/1	c0001	2406	246	61	44	95	9	35	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0002	2406	46	11	9	21	3	2	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0003	2406	16	8	0	6	0	2	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0004	2406	3	3	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0005	2406	3	0	2	0	1	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0006	2406	3	3	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0007	2406	2	0	0	2	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0008	2406	2	0	0	2	0	0	copy fasta	TFR2	chr7	100615420	100646552