JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TFR2_chr7_100615420_100646552	0/0	c0009	2406	2	2	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0010	2406	2	2	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0011	2406	1	1	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0012	2406	1	0	0	1	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0013	2406	1	0	0	1	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0014	2406	1	0	0	0	1	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0015	2406	1	1	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0016	2406	1	0	0	0	0	1	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0017	2406	1	1	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0018	2406	1	0	1	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0019	2406	1	0	0	1	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0020	2406	1	0	0	1	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	c0021	2406	1	1	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFRC_chr3_196044284_196087090	1/0	c0001	2283	265	74	42	111	8	29	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/1	c0002	2283	80	9	23	30	3	14	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0003	2283	15	0	7	0	1	7	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0004	2283	4	4	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0005	2283	3	0	0	3	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0006	2283	3	0	0	3	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0007	2283	2	2	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0008	2283	2	0	0	2	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0009	2283	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0010	2283	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0011	2283	1	0	0	1	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0012	2283	1	0	1	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0013	2283	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0014	2283	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0015	2283	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0016	2283	1	0	0	1	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0017	2283	1	0	1	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	c0018	2283	1	0	0	1	0	0	copy fasta	TFRC	chr3	196044284	196087090
TF_chr3_133741393_133801641	0/0	c0001	2097	107	7	20	58	5	17	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0002	2097	64	9	10	38	1	6	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0003	2097	57	17	20	10	4	6	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/1	c0004	2097	53	2	8	33	3	6	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0005	2097	42	23	9	7	3	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0006	2097	18	17	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0007	2097	12	0	0	10	0	2	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0008	2097	11	0	5	0	2	4	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0009	2097	8	8	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0010	2097	5	0	0	5	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0011	2097	5	5	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0012	2097	3	0	0	0	0	3	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0013	2097	3	0	3	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0014	2097	2	2	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0015	2097	2	2	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0016	2097	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0017	2097	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0018	2097	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0019	2097	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641