JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TF_chr3_133741393_133801641	1/0	c0020	2097	1	0	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0021	2097	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0022	2097	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0023	2097	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0024	2097	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	c0025	2097	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TGDS_chr13_94569054_94601152	1/1	c0001	1053	367	85	70	154	12	44	copy fasta	TGDS	chr13	94569054	94601152
TGDS_chr13_94569054_94601152	0/0	c0002	1053	6	6	0	0	0	0	copy fasta	TGDS	chr13	94569054	94601152
TGDS_chr13_94569054_94601152	0/0	c0003	1053	1	1	0	0	0	0	copy fasta	TGDS	chr13	94569054	94601152
TGFA_chr2_70442284_70558826	1/1	c0001	483	259	67	53	103	7	27	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	c0002	483	69	14	12	36	1	6	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	c0003	483	6	6	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	c0004	483	5	0	0	5	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	c0005	483	4	3	1	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	c0006	483	1	0	0	0	0	1	copy fasta	TGFA	chr2	70442284	70558826
TGFB1I1_chr16_31467152_31482958	1/1	c0001	1386	395	84	65	178	16	50	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/0	c0002	1386	12	12	0	0	0	0	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/0	c0003	1386	1	0	1	0	0	0	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/0	c0004	1386	1	1	0	0	0	0	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/0	c0005	1386	1	1	0	0	0	0	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1_chr19_41325323_41358922	0/1	c0001	1173	194	44	37	70	12	30	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	1/0	c0002	1173	155	45	31	59	4	15	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	c0003	1173	13	6	4	0	1	2	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	c0004	1173	2	0	0	2	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	c0005	1173	2	0	1	0	1	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	c0006	1173	2	0	0	2	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	c0007	1173	1	0	0	0	0	1	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	c0008	1173	1	1	0	0	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	c0009	1173	1	0	1	0	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	c0010	1173	1	0	0	1	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB2_chr1_218340336_218449619	1/1	c0001	1245	287	82	47	121	6	29	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	c0002	1245	1	0	0	0	0	1	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	c0003	1245	1	0	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	c0004	1245	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB3_chr14_75953097_75986995	1/1	c0001	1239	363	87	72	158	8	36	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	c0002	1239	6	0	0	6	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	c0003	1239	5	5	0	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	c0004	1239	2	2	0	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	c0005	1239	1	0	0	1	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	c0006	1239	1	0	0	1	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFBI_chr5_136023988_136068818	0/0	c0001	2052	113	26	16	54	3	14	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/1	c0002	2052	112	4	20	67	6	14	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	1/0	c0003	2052	96	18	14	47	7	9	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0004	2052	32	25	7	0	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0005	2052	16	7	0	9	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0006	2052	8	0	0	8	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0007	2052	7	6	1	0	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0008	2052	4	4	0	0	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0009	2052	3	0	0	3	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0010	2052	2	0	0	0	0	2	copy fasta	TGFBI	chr5	136023988	136068818