JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TGFBI_chr5_136023988_136068818	0/0	c0011	2052	1	0	0	1	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0012	2052	1	0	0	0	0	1	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0013	2052	1	0	0	1	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0014	2052	1	0	0	0	0	1	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0015	2052	1	0	0	0	0	1	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0016	2068	1	1	0	0	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0017	2052	1	1	0	0	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0018	2052	1	1	0	0	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0019	2052	1	0	0	1	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0020	2052	1	0	0	1	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	c0021	2052	1	1	0	0	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBR1_chr9_99100113_99159192	1/1	c0001	1512	346	64	61	169	10	40	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	c0002	1503	10	7	1	0	2	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	c0003	1503	2	0	0	0	2	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	c0004	1500	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	c0005	1512	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	c0006	1512	1	1	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	c0007	1512	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR2_chr3_30601601_30699142	1/1	c0001	1704	303	71	65	113	18	34	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	c0002	1704	53	4	0	41	0	8	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	c0003	1704	10	9	1	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	c0004	1704	9	8	1	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	c0005	1704	6	0	0	6	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	c0006	1704	3	0	0	3	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	c0007	1704	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	c0008	1704	1	0	1	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	c0009	1704	1	0	0	1	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	c0010	1704	1	0	0	0	0	1	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	c0011	1704	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	c0012	1704	1	0	0	0	0	1	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR3L_chr19_7909830_7924097	1/1	c0001	951	443	97	84	192	18	50	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	c0002	951	1	0	0	1	0	0	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	c0003	951	1	1	0	0	0	0	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	c0004	951	1	0	0	1	0	0	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3_chr1_91675343_91891151	0/0	c0001	2556	66	27	14	15	2	8	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0002	2556	23	7	5	5	2	4	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0003	2556	23	13	6	1	0	3	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0004	2556	21	6	1	14	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0005	2556	16	6	3	5	0	2	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0006	2556	15	5	4	3	1	2	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0007	2556	15	4	2	5	1	3	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0008	2556	13	0	6	7	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0009	2556	11	1	7	0	2	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0010	2556	9	1	1	6	0	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0011	2556	8	0	2	5	1	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0012	2556	7	1	1	3	2	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0013	2556	6	2	1	2	0	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0014	2556	6	0	2	3	1	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0015	2556	6	3	0	3	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0016	2556	6	4	0	1	0	1	copy fasta	TGFBR3	chr1	91675343	91891151