JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TGFBR3_chr1_91675343_91891151	0/0	c0017	2556	4	0	0	4	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0018	2556	3	0	1	2	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0019	2556	3	1	0	2	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0020	2556	2	0	1	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0021	2556	2	0	0	2	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0022	2556	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0023	2556	1	0	1	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	1/0	c0024	2556	1	0	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0025	2556	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0026	2556	1	0	0	0	0	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0027	2556	1	0	0	0	0	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0028	2556	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0029	2556	1	0	0	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/1	c0030	2556	1	0	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0031	2556	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0032	2556	1	0	0	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0033	2556	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0034	2556	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0035	2556	1	0	1	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0036	2556	1	0	1	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0037	2556	1	0	0	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0038	2556	1	0	0	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0039	2556	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	c0040	2556	1	0	0	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBRAP1_chr2_105259414_105334735	0/0	c0001	2583	110	25	12	62	2	9	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0002	2583	69	1	13	38	4	13	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	1/0	c0003	2583	69	10	6	38	4	10	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/1	c0004	2583	48	17	13	7	4	6	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0005	2583	24	0	10	8	2	4	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0006	2583	12	8	1	2	0	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0007	2583	9	6	2	0	0	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0008	2583	7	0	0	7	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0009	2583	7	7	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0010	2583	4	3	1	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0011	2583	4	4	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0012	2583	4	0	3	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0013	2583	2	0	1	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0014	2583	2	2	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0015	2583	1	0	0	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0016	2583	1	1	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0017	2583	1	0	1	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0018	2583	1	0	0	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0019	2583	1	1	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0020	2583	1	0	0	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0021	2583	1	0	0	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0022	2583	1	0	1	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	c0023	2583	1	1	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGIF1_chr18_3445172_3464978	1/1	c0001	819	325	52	65	150	13	43	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	c0002	819	49	15	5	28	0	1	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	c0003	819	42	1	6	29	2	4	copy fasta	TGIF1	chr18	3445172	3464978