Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABLIM1_chr10_114426112_114663275	1/0	c0003	2337	69	7	13	31	5	12	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0004	2337	4	4	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0005	2337	3	3	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0006	2337	3	3	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0007	2337	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0008	2337	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0009	2337	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0010	2337	2	0	0	2	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0011	2337	2	0	0	0	0	2	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0012	2337	1	0	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0013	2337	1	0	0	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0014	2337	1	0	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0015	2337	1	0	0	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0016	2337	1	0	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0017	2337	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0018	2337	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0019	2337	1	0	0	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0020	2337	1	0	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0021	2337	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0022	2337	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0023	2337	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	c0024	2337	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM2_chr4_7960327_8163813	0/1	c0001	1938	199	53	40	76	9	20	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	1/0	c0002	1938	81	20	17	25	3	15	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	c0003	1938	27	12	4	4	1	6	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	c0004	1938	8	3	1	2	0	2	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	c0005	1938	2	0	2	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	c0006	1938	1	1	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	c0007	1938	1	0	0	0	1	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	c0008	1938	1	1	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	c0009	1938	1	0	0	1	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	c0010	1938	1	0	0	0	0	1	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM3_chr5_149136493_149265542	1/1	c0001	2052	229	52	34	107	10	24	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0002	2052	5	4	1	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0003	2052	4	3	1	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0004	2052	3	3	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0005	2052	3	3	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0006	2052	3	3	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0007	2052	2	0	2	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0008	2052	2	0	1	0	0	1	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0009	2052	2	0	1	0	0	1	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0010	2052	1	1	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0011	2052	1	0	0	1	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0012	2052	1	0	0	1	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0013	2052	1	1	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	c0014	2052	1	0	0	1	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABRACL_chr6_139023745_139048302	1/1	c0001	246	448	94	70	220	14	48	copy fasta	ABRACL	chr6	139023745	139048302
ABRAXAS1_chr4_83454517_83490100	1/0	c0001	1230	192	77	28	56	9	21	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/1	c0002	1230	146	13	21	92	3	16	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	c0003	1230	7	0	4	3	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100