JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BATF_chr14_75517469_75551992	1/1	c0001	378	356	73	72	158	16	35	copy fasta	BATF	chr14	75517469	75551992
BATF_chr14_75517469_75551992	0/0	c0002	378	20	17	2	0	0	1	copy fasta	BATF	chr14	75517469	75551992
BAX_chr19_48949875_48966798	1/1	c0001	579	413	95	78	185	16	37	copy fasta	BAX	chr19	48949875	48966798
BAX_chr19_48949875_48966798	0/0	c0002	579	3	0	0	0	0	3	copy fasta	BAX	chr19	48949875	48966798
BAX_chr19_48949875_48966798	0/0	c0003	579	1	0	0	1	0	0	copy fasta	BAX	chr19	48949875	48966798
BAX_chr19_48949875_48966798	0/0	c0004	579	1	1	0	0	0	0	copy fasta	BAX	chr19	48949875	48966798
BAZ1A_chr14_34747731_34880360	1/1	c0001	4671	154	36	29	65	6	16	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0002	4671	134	23	16	77	5	13	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0003	4671	35	1	18	12	2	2	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0004	4671	34	13	7	4	1	9	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0005	4671	8	5	3	0	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0006	4671	7	1	2	0	1	3	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0007	4671	1	1	0	0	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0008	4671	1	0	0	1	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0009	4671	1	0	0	0	1	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0010	4671	1	1	0	0	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0011	4671	1	0	0	1	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0012	4671	1	0	1	0	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0013	4671	1	1	0	0	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	c0014	4671	1	0	0	0	0	1	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1B_chr7_73435406_73527293	1/1	c0001	4452	148	55	29	36	7	19	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	c0002	4452	45	1	11	19	5	9	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	c0003	4452	3	2	1	0	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	c0004	4452	1	0	0	1	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	c0005	4452	1	0	1	0	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	c0006	4452	1	1	0	0	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	c0007	4452	1	1	0	0	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ2A_chr12_56590596_56635326	1/1	c0001	5712	250	41	47	122	12	26	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0002	5712	25	24	0	0	1	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0003	5712	19	18	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0004	5712	3	0	2	0	1	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0005	5712	3	0	0	3	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0006	5712	3	3	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0007	5712	2	0	2	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0008	5712	1	0	0	0	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0009	5712	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0010	5712	1	0	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0011	5712	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0012	5712	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0013	5712	1	0	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0014	5712	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0015	5712	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0016	5712	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0017	5712	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	c0018	5712	1	0	0	0	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2B_chr2_159313979_159621548	1/0	c0001	6507	118	25	28	49	6	9	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/1	c0002	6507	33	15	6	9	0	2	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0003	6507	10	1	1	5	1	2	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0004	6507	7	1	0	6	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0005	6507	7	0	0	5	0	2	copy fasta	BAZ2B	chr2	159313979	159621548