JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TGM2_chr20_38122385_38170270	0/0	c0002	2064	75	22	9	37	2	5	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0003	2064	21	0	0	21	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0004	2064	20	11	3	6	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0005	2064	6	0	1	5	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0006	2064	5	5	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0007	2064	4	0	3	0	0	1	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0008	2064	3	3	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0009	2064	2	1	1	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0010	2064	2	0	0	2	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0011	2064	2	0	0	0	0	2	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0012	2064	2	1	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0013	2064	2	2	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0014	2064	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0015	2064	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0016	2064	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0017	2064	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0018	2064	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0019	2064	1	1	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0020	2064	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0021	2064	1	0	0	0	0	1	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0022	2064	1	0	0	0	1	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0023	2064	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0024	2064	1	1	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0025	2064	1	1	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0026	2064	1	0	0	0	0	1	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0027	2064	1	1	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	c0028	2064	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM3_chr20_2291001_2346079	0/0	c0001	2082	183	17	31	108	6	21	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0002	2082	41	2	15	11	3	10	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0003	2082	29	13	5	9	0	2	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0004	2082	28	25	3	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/1	c0005	2082	20	10	0	6	0	3	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	1/0	c0006	2082	15	2	6	1	3	2	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0007	2082	14	3	5	4	0	2	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0008	2082	3	1	1	0	0	1	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0009	2082	3	0	3	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0010	2082	3	0	0	3	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0011	2082	3	3	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0012	2082	2	2	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0013	2082	2	1	1	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0014	2082	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0015	2082	1	0	0	1	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0016	2082	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0017	2082	1	0	0	0	0	1	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0018	2082	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0019	2082	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0020	2082	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0021	2082	1	0	0	1	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0022	2082	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0023	2082	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079