JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TGM3_chr20_2291001_2346079	0/0	c0024	2082	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0025	2082	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0026	2082	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	c0027	2082	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM4_chr3_44869608_44919990	0/0	c0001	2055	83	9	18	40	2	14	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	1/1	c0002	2055	79	15	26	20	7	9	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0003	2055	36	10	5	9	1	11	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0004	2055	30	4	13	7	4	2	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0005	2055	15	12	2	0	0	1	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0006	2055	7	7	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0007	2055	7	4	2	0	1	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0008	2055	6	0	0	6	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0009	2055	6	5	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0010	2055	5	5	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0011	2055	5	4	0	0	1	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0012	2055	4	4	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0013	2055	3	3	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0014	2055	3	0	0	3	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0015	2055	3	3	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0016	2055	2	0	2	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0017	2055	2	0	0	2	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0018	2055	2	0	2	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0019	2055	2	1	1	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0020	2055	2	2	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0021	2055	1	0	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0022	2055	1	0	1	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0023	2055	1	0	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0024	2055	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0025	2055	1	0	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0026	2055	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0027	2055	1	0	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0028	2055	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0029	2055	1	0	0	0	0	1	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0030	2055	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0031	2055	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	c0032	2055	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM5_chr15_43227590_43271928	1/1	c0001	2163	122	7	33	58	8	14	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0002	2163	86	35	12	19	6	14	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0003	2163	59	23	6	26	0	4	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0004	2163	18	0	0	18	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0005	2163	17	11	0	6	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0006	2163	8	0	0	8	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0007	2163	7	5	1	0	0	1	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0008	2163	3	0	0	3	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0009	2163	3	3	0	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0010	2163	2	0	0	2	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0011	2163	2	1	1	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0012	2163	1	0	1	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0013	2163	1	0	1	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0014	2163	1	0	0	0	0	1	copy fasta	TGM5	chr15	43227590	43271928