JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TGM5_chr15_43227590_43271928	0/0	c0015	2163	1	0	1	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0016	2163	1	1	0	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0017	2163	1	1	0	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	c0018	2163	1	1	0	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM6_chr20_2375901_2437753	0/1	c0001	2121	181	27	38	79	9	27	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0002	2121	63	26	7	21	1	8	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0003	2121	46	1	4	37	0	4	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0004	2121	42	3	11	16	6	6	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	1/0	c0005	2121	31	0	3	26	0	1	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0006	2121	12	5	4	2	0	1	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0007	2121	4	4	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0008	2121	4	4	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0009	2121	3	3	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0010	2121	3	3	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0011	2121	2	0	0	2	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0012	2121	2	2	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0013	2121	2	2	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0014	2121	2	1	1	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0015	2121	1	0	0	1	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0016	2121	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0017	2121	1	0	0	1	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0018	2121	1	0	0	1	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0019	2121	1	0	0	1	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0020	2121	1	0	0	1	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0021	2121	1	0	1	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0022	2121	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0023	2121	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0024	2121	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0025	2121	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0026	2121	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0027	2121	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0028	2121	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0029	2121	1	0	1	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0030	2121	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0031	2121	1	0	0	0	0	1	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0032	2121	1	0	1	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0033	2121	1	0	0	0	0	1	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0034	2121	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0035	2121	1	0	1	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0036	2121	1	0	0	0	0	1	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	c0037	2121	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM7_chr15_43271271_43307255	0/0	c0001	2133	186	65	22	73	6	20	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0002	2133	122	7	26	67	6	16	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0003	2133	10	0	0	10	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0004	2133	7	7	0	0	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0005	2133	4	0	2	1	0	1	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0006	2133	2	0	0	2	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0007	2133	1	0	0	1	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0008	2133	1	0	0	0	0	1	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0009	2133	1	1	0	0	0	0	copy fasta	TGM7	chr15	43271271	43307255