JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TGM7_chr15_43271271_43307255	0/0	c0010	2133	1	1	0	0	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0011	2133	1	0	0	1	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0012	2133	1	0	1	0	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0013	2133	1	0	1	0	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0014	2133	1	0	0	1	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0015	2133	1	0	0	1	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0016	2133	1	0	0	1	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	c0017	2133	1	1	0	0	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGOLN2_chr2_85313027_85332989	0/0	c0001	1314	237	35	45	130	5	22	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	1/1	c0002	1314	115	33	23	37	7	13	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	c0003	1314	26	17	5	0	1	3	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	c0004	1314	5	1	0	4	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	c0005	1314	3	3	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	c0006	1314	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	c0007	1314	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	c0008	1314	1	0	0	0	1	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	c0009	1314	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	c0010	1314	1	0	1	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	c0011	1314	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	c0012	1314	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	c0013	1314	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGS1_chr8_55768446_55831445	0/1	c0001	2562	292	56	45	151	11	28	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0002	2562	25	13	5	1	1	5	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0003	2562	8	7	1	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0004	2562	6	2	1	2	0	1	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0005	2562	5	5	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0006	2562	4	4	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0007	2562	3	0	0	0	0	3	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0008	2562	2	0	2	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0009	2562	2	0	0	0	0	2	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0010	2562	2	0	2	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0011	2562	2	2	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0012	2562	2	0	0	0	0	2	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0013	2562	1	0	1	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0014	2562	1	0	1	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0015	2562	1	1	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0016	2562	1	0	0	1	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0017	2562	1	1	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0018	2562	1	1	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0019	2562	1	1	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0020	2562	1	0	0	0	0	1	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0021	2562	1	0	0	0	0	1	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0022	2562	1	0	0	1	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0023	2562	1	1	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0024	2562	1	0	0	1	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0025	2562	1	0	0	1	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	1/0	c0026	2562	1	0	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0027	2562	1	0	1	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0028	2562	1	0	0	0	0	1	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	c0029	2562	1	0	1	0	0	0	copy fasta	TGS1	chr8	55768446	55831445