JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TG_chr8_132861958_133139899	0/0	c0001	8307	8	0	1	5	0	2	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/1	c0002	8307	8	0	0	4	0	3	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0003	8307	7	0	2	4	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0004	8307	7	0	3	3	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	1/0	c0005	8307	7	0	1	4	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0006	8307	5	0	1	1	2	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0007	8307	4	0	1	3	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0008	8307	4	0	0	2	0	2	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0009	8307	4	0	2	0	0	2	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0010	8304	3	3	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0011	8307	3	1	1	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0012	8307	3	0	0	3	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0013	8307	3	0	1	1	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0014	8307	2	2	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0015	8307	2	0	0	2	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0016	8307	2	0	0	2	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0017	8307	2	2	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0018	8307	2	2	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0019	8307	2	2	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0020	8307	2	2	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0021	8307	2	0	0	2	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0022	8307	2	0	2	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0023	8307	2	0	1	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0024	8307	2	1	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0025	8307	2	0	2	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0026	8307	2	2	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0027	8307	2	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0028	8307	2	0	0	0	0	2	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0029	8307	2	2	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0030	8307	2	2	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0031	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0032	8307	1	0	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0033	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0034	8307	1	0	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0035	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0036	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0037	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0038	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0039	8307	1	0	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0040	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0041	8307	1	0	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0042	8307	1	0	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0043	8307	1	0	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0044	8307	1	0	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0045	8307	1	0	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0046	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0047	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0048	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0049	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0050	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899