JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
TG_chr8_132861958_133139899	0/0	c0051	8304	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0052	8307	1	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0053	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0054	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0055	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0056	8307	1	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0057	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0058	8307	1	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0059	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0060	8307	1	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0061	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0062	8307	1	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0063	8307	1	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0064	8307	1	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0065	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0066	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0067	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0068	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0069	8307	1	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0070	8307	1	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0071	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0072	8307	1	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0073	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0074	8307	1	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0075	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0076	8307	1	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0077	8307	1	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0078	8307	1	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0079	8307	1	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0080	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0081	8307	1	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0082	8307	1	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0083	8307	1	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0084	8307	1	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0085	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0086	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0087	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0088	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0089	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0090	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0091	8307	1	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0092	8307	1	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0093	8307	1	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0094	8307	1	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0095	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0096	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0097	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0098	8307	1	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0099	8307	1	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0100	8307	1	0	1	0	0	copy fasta	TG	chr8	132861958	133139899