JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TG_chr8_132861958_133139899	0/0	c0101	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0102	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0103	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0104	8307	1	0	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0105	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0106	8307	1	0	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0107	8307	1	0	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0108	8307	1	0	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0109	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0110	8307	1	0	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0111	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0112	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0113	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0114	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0115	8307	1	0	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0116	8307	1	0	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0117	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0118	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0119	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0120	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0121	8307	1	0	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0122	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0123	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0124	8307	1	0	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0125	8307	1	0	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0126	8307	1	0	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0127	8307	1	0	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0128	8307	1	0	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0129	8307	1	0	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0130	8307	1	0	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0131	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0132	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0133	8307	1	0	0	0	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0134	8307	1	0	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0135	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0136	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0137	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0138	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0139	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0140	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0141	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0142	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0143	8307	1	0	0	1	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0144	8307	1	0	0	0	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0145	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	c0146	8307	1	1	0	0	0	0	copy fasta	TG	chr8	132861958	133139899
THADA_chr2_43225851_43601038	1/0	c0001	5862	56	15	13	13	2	12	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0002	5862	32	5	10	10	2	5	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/1	c0003	5862	29	7	9	2	3	7	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0004	5862	10	0	9	0	0	1	copy fasta	THADA	chr2	43225851	43601038