JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THADA_chr2_43225851_43601038	0/0	c0005	5862	7	3	0	1	0	3	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0006	5862	7	4	2	0	0	1	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0007	5862	6	4	2	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0008	5862	6	6	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0009	5862	5	4	1	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0010	5862	4	0	1	0	1	2	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0011	5859	4	3	1	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0012	5862	4	4	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0013	5862	3	3	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0014	5862	3	2	1	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0015	5862	3	1	0	0	0	2	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0016	5862	2	0	0	0	0	2	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0017	5862	2	2	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0018	5862	2	0	0	2	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0019	5862	1	0	0	0	0	1	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0020	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0021	5862	1	0	0	0	0	1	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0022	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0023	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0024	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0025	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0026	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0027	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0028	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0029	5862	1	0	0	0	0	1	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0030	5862	1	0	0	0	0	1	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0031	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0032	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0033	5859	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0034	5862	1	0	0	1	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0035	5862	1	0	0	0	0	1	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0036	5862	1	0	0	1	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0037	5862	1	0	1	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0038	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	c0039	5862	1	1	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THAP10_chr15_70876342_70897433	0/0	c0001	774	236	59	29	115	6	27	copy fasta	THAP10	chr15	70876342	70897433
THAP10_chr15_70876342_70897433	1/1	c0002	774	180	28	49	81	6	14	copy fasta	THAP10	chr15	70876342	70897433
THAP10_chr15_70876342_70897433	0/0	c0003	774	2	0	0	0	0	2	copy fasta	THAP10	chr15	70876342	70897433
THAP10_chr15_70876342_70897433	0/0	c0004	774	1	0	0	0	0	1	copy fasta	THAP10	chr15	70876342	70897433
THAP10_chr15_70876342_70897433	0/0	c0005	774	1	1	0	0	0	0	copy fasta	THAP10	chr15	70876342	70897433
THAP11_chr16_67837320_67849195	1/1	c0001	945	185	42	36	80	2	23	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0002	942	67	31	20	7	2	7	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0003	942	6	6	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0004	948	4	2	1	1	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0005	972	3	0	0	2	0	1	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0006	924	3	3	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0007	960	2	0	0	2	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0008	927	2	0	0	2	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0009	945	2	0	0	2	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0010	945	1	0	0	0	0	1	copy fasta	THAP11	chr16	67837320	67849195