JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THAP11_chr16_67837320_67849195	0/0	c0011	969	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0012	945	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0013	933	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0014	927	1	0	1	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0015	945	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0016	915	1	0	1	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0017	972	1	0	0	1	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0018	972	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0019	942	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0020	924	1	0	0	1	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	c0021	945	1	0	1	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP12_chr11_76344956_76386132	1/1	c0001	2286	350	71	65	155	13	44	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	c0002	2286	26	0	3	22	1	0	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	c0003	2286	4	4	0	0	0	0	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	c0004	2286	1	0	0	1	0	0	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	c0005	2286	1	1	0	0	0	0	copy fasta	THAP12	chr11	76344956	76386132
THAP1_chr8_42831674_42848325	1/1	c0001	642	314	86	60	126	8	32	copy fasta	THAP1	chr8	42831674	42848325
THAP2_chr12_71659301_71685644	1/1	c0001	687	346	83	50	158	14	39	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	c0002	684	10	0	3	2	0	5	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	c0003	687	10	10	0	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	c0004	687	2	0	0	2	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	c0005	672	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	c0006	687	1	1	0	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	c0007	687	1	0	1	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	c0008	687	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	c0009	687	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	c0010	687	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP3_chr1_6619868_6638562	1/1	c0001	720	268	76	50	106	9	25	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	c0002	720	139	17	28	70	7	17	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	c0003	720	3	3	0	0	0	0	copy fasta	THAP3	chr1	6619868	6638562
THAP4_chr2_241579405_241642158	0/1	c0001	1734	139	36	25	68	3	6	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	c0002	1734	134	16	11	89	2	16	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	1/0	c0003	1734	75	23	17	14	9	11	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	c0004	1734	33	14	9	6	0	4	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	c0005	1734	2	2	0	0	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	c0006	1734	2	2	0	0	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	c0007	1734	1	1	0	0	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	c0008	1734	1	0	1	0	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	c0009	1734	1	0	0	0	0	1	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	c0010	1734	1	0	0	1	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	c0011	1734	1	0	1	0	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP5_chr7_108557132_108574706	1/1	c0001	1188	409	83	71	201	8	44	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	c0002	1188	9	8	1	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	c0003	1188	4	4	0	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	c0004	1188	1	1	0	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	c0005	1188	1	0	0	1	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP6_chr4_75509473_75535026	1/1	c0001	669	386	80	68	187	12	37	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	c0002	669	14	14	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	c0003	669	7	0	0	7	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	c0004	669	2	0	0	2	0	0	copy fasta	THAP6	chr4	75509473	75535026