JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BAZ2B_chr2_159313979_159621548	0/0	c0006	6507	4	2	0	1	0	1	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0007	6507	4	2	1	0	0	1	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0008	6507	4	0	2	0	0	2	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0009	6507	3	3	0	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0010	6507	3	0	0	3	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0011	6507	2	0	0	2	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0012	6507	1	0	1	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0013	6507	1	0	0	0	0	1	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0014	6507	1	0	0	0	1	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0015	6507	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0016	6507	1	0	1	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0017	6507	1	1	0	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0018	6507	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0019	6507	1	1	0	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0020	6507	1	1	0	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0021	6507	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0022	6507	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0023	6507	1	1	0	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0024	6507	1	0	1	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0025	6507	1	1	0	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0026	6507	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0027	6507	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0028	6507	1	0	0	0	1	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0029	6507	1	0	0	0	1	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0030	6507	1	0	1	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0031	6507	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	c0032	6507	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BBC3_chr19_47215824_47236199	1/1	c0001	582	410	94	68	182	16	48	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	c0002	582	2	0	0	2	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBIP1_chr10_110893730_110924180	1/1	c0001	279	417	91	60	204	14	46	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	c0002	279	1	1	0	0	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBLN_chr9_128155265_128168924	1/1	c0001	252	394	98	64	170	18	42	copy fasta	BBLN	chr9	128155265	128168924
BBLN_chr9_128155265_128168924	0/0	c0002	252	2	0	0	0	0	2	copy fasta	BBLN	chr9	128155265	128168924
BBOF1_chr14_74014349_74071092	0/0	c0001	1590	111	18	16	53	3	21	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	1/0	c0002	1590	102	37	22	27	8	7	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/1	c0003	1590	79	3	9	62	1	3	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0004	1590	46	0	22	15	2	7	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0005	1590	11	11	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0006	1590	11	9	2	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0007	1590	7	7	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0008	1590	3	3	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0009	1590	3	2	0	0	0	1	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0010	1590	2	0	0	2	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0011	1590	2	0	0	2	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0012	1590	2	2	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0013	1590	1	0	0	1	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0014	1590	1	0	0	0	0	1	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0015	1590	1	0	0	1	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0016	1590	1	0	1	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0017	1590	1	0	0	0	0	1	copy fasta	BBOF1	chr14	74014349	74071092