JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THAP6_chr4_75509473_75535026	0/0	c0005	669	1	0	0	0	0	1	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	c0006	669	1	0	0	1	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	c0007	669	1	0	0	1	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP7_chr22_20994104_21007118	0/1	c0001	930	371	85	72	158	17	38	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	1/0	c0002	930	40	8	6	19	1	5	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0003	930	3	0	3	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0004	930	2	2	0	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0005	930	2	0	0	2	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0006	930	2	2	0	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0007	930	2	0	0	2	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0008	930	2	0	0	2	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0009	930	1	0	0	0	0	1	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0010	930	1	0	0	1	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0011	930	1	0	0	1	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0012	930	1	0	0	1	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0013	930	1	1	0	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0014	930	1	0	1	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0015	930	1	0	0	1	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	c0016	930	1	0	0	1	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP8_chr19_36029984_36059285	1/1	c0001	825	230	67	41	81	9	30	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0002	825	115	18	8	72	8	9	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0003	825	48	2	5	38	0	3	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0004	825	35	4	20	4	1	6	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0005	825	2	0	0	2	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0006	825	2	0	0	2	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0007	844	1	1	0	0	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0008	825	1	0	0	1	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0009	825	1	0	0	1	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0010	825	1	1	0	0	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0011	825	1	0	0	1	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0012	825	1	0	0	1	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0013	825	1	1	0	0	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	c0014	825	1	0	0	1	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP9_chr4_82895735_82924969	0/0	c0001	2712	250	65	24	132	4	25	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/1	c0002	2712	104	2	33	49	4	15	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0003	2712	9	9	0	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0004	2712	6	0	0	6	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0005	2712	4	4	0	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	1/0	c0006	2712	2	1	0	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0007	2712	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0008	2712	1	1	0	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0009	2712	1	0	0	0	0	1	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0010	2712	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0011	2712	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0012	2712	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0013	2712	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0014	2712	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0015	2712	1	0	0	0	0	1	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0016	2712	1	0	1	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0017	2712	1	0	1	0	0	0	copy fasta	THAP9	chr4	82895735	82924969