JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THAP9_chr4_82895735_82924969	0/0	c0018	2712	1	0	1	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	c0019	2712	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THBD_chr20_23040633_23054672	1/0	c0001	1728	357	85	72	150	11	38	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/1	c0002	1728	81	2	6	60	4	8	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0003	1728	7	6	1	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0004	1728	5	0	2	3	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0005	1728	3	0	2	0	1	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0006	1728	3	3	0	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0007	1728	2	2	0	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0008	1728	2	0	0	2	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0009	1728	1	0	0	0	0	1	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0010	1728	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0011	1728	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0012	1728	1	0	1	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0013	1728	1	0	0	0	0	1	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0014	1728	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0015	1728	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	c0016	1728	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBS1_chr15_39576079_39604466	1/1	c0001	3513	154	24	35	67	9	17	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0002	3513	97	5	15	69	0	8	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0003	3513	28	24	4	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0004	3513	12	0	4	0	3	5	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0005	3513	12	11	1	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0006	3513	8	8	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0007	3513	6	0	0	6	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0008	3513	5	5	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0009	3513	4	0	0	4	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0010	3513	4	3	1	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0011	3513	3	0	0	3	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0012	3513	3	3	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0013	3513	2	0	0	2	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0014	3513	2	1	1	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0015	3513	2	0	1	0	1	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0016	3513	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0017	3513	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0018	3513	1	0	0	0	0	1	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0019	3513	1	0	0	1	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0020	3513	1	0	0	0	0	1	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0021	3513	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0022	3513	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0023	3513	1	0	0	0	1	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0024	3513	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	c0025	3513	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS2_chr6_169210785_169258846	1/1	c0001	3519	170	17	38	89	4	20	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0002	3519	33	13	7	4	4	5	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0003	3519	31	5	8	16	0	2	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0004	3519	20	3	1	14	1	1	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0005	3519	18	6	6	4	0	2	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0006	3519	16	3	2	11	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0007	3519	10	0	8	0	2	0	copy fasta	THBS2	chr6	169210785	169258846