JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THBS2_chr6_169210785_169258846	0/0	c0008	3519	8	1	0	7	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0009	3519	8	0	3	5	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0010	3519	6	5	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0011	3519	6	0	0	0	1	5	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0012	3519	5	5	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0013	3519	4	0	2	0	2	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0014	3519	3	3	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0015	3519	3	3	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0016	3519	3	1	0	0	0	2	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0017	3519	3	3	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0018	3519	3	0	1	0	2	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0019	3519	3	2	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0020	3519	2	2	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0021	3519	2	2	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0022	3519	2	2	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0023	3519	2	0	2	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0024	3519	2	2	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0025	3519	2	2	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0026	3519	2	2	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0027	3519	2	0	1	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0028	3519	2	2	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0029	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0030	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0031	3519	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0032	3519	1	0	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0033	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0034	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0035	3519	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0036	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0037	3519	1	0	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0038	3519	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0039	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0040	3519	1	0	0	0	0	1	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0041	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0042	3519	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0043	3519	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0044	3519	1	0	0	0	0	1	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0045	3519	1	0	0	0	0	1	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0046	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0047	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0048	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0049	3519	1	0	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0050	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0051	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0052	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	c0053	3519	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS3_chr1_155190588_155212897	1/1	c0001	2871	261	68	48	105	11	27	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	c0002	2871	24	13	2	3	2	4	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	c0003	2871	4	4	0	0	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	c0004	2871	2	0	0	0	1	1	copy fasta	THBS3	chr1	155190588	155212897