JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THBS3_chr1_155190588_155212897	0/0	c0005	2871	1	0	1	0	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	c0006	2871	1	0	1	0	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	c0007	2871	1	0	0	0	0	1	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	c0008	2871	1	0	0	0	0	1	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	c0009	2871	1	1	0	0	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	c0010	2871	1	0	0	1	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	c0011	2871	1	0	0	1	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS4_chr5_80030348_80088287	1/1	c0001	2886	148	24	10	85	6	21	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0002	2886	88	14	23	36	5	10	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0003	2886	79	17	11	45	2	4	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0004	2886	38	10	16	5	2	5	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0005	2886	11	0	0	11	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0006	2886	7	0	7	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0007	2886	7	0	0	7	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0008	2886	4	3	1	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0009	2886	3	3	0	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0010	2886	2	2	0	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0011	2886	1	1	0	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0012	2886	1	0	0	1	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0013	2886	1	0	0	0	0	1	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0014	2886	1	0	0	0	1	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0015	2886	1	1	0	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0016	2886	1	0	0	0	0	1	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	c0017	2886	1	1	0	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THEGL_chr4_56525606_56608507	1/1	c0001	1398	131	19	25	58	9	18	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0002	1398	85	5	17	54	3	6	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0003	1398	77	28	19	19	3	8	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0004	1398	37	3	1	31	1	1	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0005	1398	8	6	1	0	0	1	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0006	1398	6	5	1	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0007	1398	6	6	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0008	1398	3	3	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0009	1398	3	0	3	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0010	1398	3	1	1	1	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0011	1398	3	3	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0012	1398	3	0	0	3	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0013	1398	2	2	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0014	1398	2	2	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0015	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0016	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0017	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0018	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0019	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0020	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0021	1398	1	0	1	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0022	1398	1	0	1	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0023	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0024	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0025	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0026	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507