JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THEGL_chr4_56525606_56608507	0/0	c0027	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0028	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	c0029	1398	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEG_chr19_356747_381026	1/1	c0001	1140	196	57	55	43	14	25	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0002	1140	60	0	3	53	0	4	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0003	1140	21	11	7	0	1	2	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0004	1140	17	0	0	12	1	4	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0005	1140	12	1	0	9	0	2	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0006	1140	7	4	2	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0007	1140	6	6	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0008	1140	6	0	0	6	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0009	1140	6	0	0	6	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0010	1140	4	0	0	4	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0011	1140	3	3	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0012	1140	2	0	1	0	0	1	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0013	1140	2	0	0	2	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0014	1140	2	0	0	2	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0015	1140	2	2	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0016	1140	2	2	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0017	1140	2	0	2	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0018	1140	2	0	1	0	0	1	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0019	1140	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0020	1140	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0021	980	1	0	1	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0022	1140	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0023	1140	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0024	1140	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0025	1140	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0026	1140	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0027	1140	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0028	1140	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0029	1140	1	0	1	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0030	1140	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0031	1140	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0032	1140	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0033	1140	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0034	1140	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0035	1113	1	0	1	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	c0036	1140	1	0	0	0	0	1	copy fasta	THEG	chr19	356747	381026
THEM4_chr1_151865866_151914511	0/1	c0001	723	323	70	46	160	12	34	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	1/0	c0002	723	38	11	9	12	3	2	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	c0003	723	4	3	0	0	1	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	c0004	723	3	3	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	c0005	723	2	2	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	c0006	723	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	c0007	723	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	c0008	723	1	0	1	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	c0009	723	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM5_chr1_151842101_151858712	0/1	c0001	744	264	66	45	119	13	20	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	c0002	744	93	7	6	63	2	15	copy fasta	THEM5	chr1	151842101	151858712