JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THEM5_chr1_151842101_151858712	0/0	c0003	744	65	13	28	13	3	8	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	c0004	744	4	3	1	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	c0005	744	3	2	0	0	0	1	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	c0006	744	3	0	0	0	0	3	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	c0007	744	2	2	0	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	c0008	744	1	0	0	1	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	c0009	744	1	1	0	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	c0010	744	1	1	0	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	c0011	744	1	1	0	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	c0012	744	1	0	0	0	0	1	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	1/0	c0013	744	1	0	0	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM6_chr8_142722223_142741927	1/1	c0001	627	218	32	44	108	10	22	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	c0002	627	181	45	32	76	8	20	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	c0003	627	6	6	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	c0004	627	5	4	0	1	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	c0005	627	1	1	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	c0006	627	1	0	1	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	c0007	627	1	0	1	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	c0008	627	1	0	0	1	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEMIS2_chr1_27867544_27891675	1/0	c0001	1932	191	54	38	79	5	14	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/1	c0002	1932	176	11	39	79	13	33	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0003	1932	11	8	3	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0004	1932	6	5	1	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0005	1932	5	5	0	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0006	1932	3	2	1	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0007	1932	2	2	0	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0008	1932	2	0	0	2	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0009	1932	2	2	0	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0010	1932	1	1	0	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0011	1932	1	0	0	1	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0012	1932	1	0	0	1	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0013	1932	1	1	0	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0014	1932	1	0	0	1	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0015	1932	1	1	0	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0016	1932	1	0	0	0	0	1	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	c0017	1932	1	0	0	1	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS_chr6_127703200_127906058	0/0	c0001	1926	101	17	28	39	5	12	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/1	c0002	1926	97	42	22	15	6	11	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	c0003	1926	15	6	3	5	1	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	c0004	1926	3	2	0	1	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	c0005	1926	1	0	0	0	0	1	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	c0006	1926	1	0	0	1	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	c0007	1926	1	0	1	0	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	c0008	1926	1	1	0	0	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	c0009	1926	1	0	0	1	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	c0010	1926	1	1	0	0	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	c0011	1926	1	1	0	0	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THG1L_chr5_157726420_157746449	0/1	c0001	897	278	64	45	122	15	31	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	1/0	c0002	897	117	17	34	52	1	12	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	c0003	897	43	13	2	25	0	3	copy fasta	THG1L	chr5	157726420	157746449